CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRH35987

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	KRG90774	AT5G04280.1	21798944
AT5G06770.1	KRH35987	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67057	Soybean	nucleus	97.97	97.97
KRG95373	Soybean	cytosol	94.92	94.92
KRH71867	Soybean	nucleus	84.75	84.75
VIT_08s0007g06400.t01	Wine grape	cytosol	74.58	74.07
VIT_11s0016g04280.t01	Wine grape	cytosol	32.88	70.8
Solyc10g078750.1.1	Tomato	nucleus	67.46	67.92
PGSC0003DMT400029683	Potato	cytosol	68.81	67.44
PGSC0003DMT400060957	Potato	cytosol	66.78	67.01
Solyc10g080480.1.1	Tomato	nucleus	65.08	66.44
PGSC0003DMT400025445	Potato	cytosol	63.05	65.49
CDY47892	Canola	cytosol	50.85	65.22
Bra001436.1-P	Field mustard	cytosol	51.86	65.11
CDX73836	Canola	cytosol	51.19	64.26
KRG93085	Soybean	cytosol	64.41	63.97
CDY01104	Canola	cytosol	51.86	63.75
KRH36330	Soybean	nucleus	64.07	63.64
AT3G12130.1	Thale cress	cytosol	53.22	63.31
CDY00756	Canola	cytosol	50.51	63.14
CDY08453	Canola	cytosol	52.2	63.11
Bra034776.1-P	Field mustard	cytosol	52.2	63.11
AT5G06770.1	Thale cress	cytosol	50.85	62.5
GSMUA_Achr7P20530_001	Banana	nucleus	62.71	61.87
Solyc03g063200.2.1	Tomato	nucleus	33.22	60.12
GSMUA_Achr1P19650_001	Banana	nucleus	61.02	59.21
Os02t0194200-01	Rice	nucleus	59.66	58.67
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	47.46	57.14
TraesCS7A01G402300.1	Wheat	cytosol	57.97	57.0
TraesCS7B01G302400.1	Wheat	cytosol	57.97	57.0
TraesCS7D01G396100.2	Wheat	cytosol	57.97	57.0
Os06t0618100-01	Rice	nucleus	49.83	56.76
Os04t0665700-01	Rice	nucleus	59.32	56.63
Zm00001d036796_P004	Maize	extracellular	57.63	56.48
TraesCS6B01G194300.1	Wheat	cytosol	56.27	55.89
Zm00001d001933_P001	Maize	nucleus	57.97	55.7
TraesCS6A01G166900.1	Wheat	cytosol	57.29	55.59
EES11610	Sorghum	cytosol	57.63	55.56
EES04688	Sorghum	nucleus	55.25	55.25
KXG20371	Sorghum	cytosol	57.29	55.05
TraesCS2D01G488300.1	Wheat	nucleus, plastid	56.61	54.93
TraesCS6D01G155400.1	Wheat	cytosol	56.27	54.61
TraesCS2B01G515600.1	Wheat	nucleus, plastid	56.61	54.4
TraesCS2A01G488000.1	Wheat	nucleus, plastid	56.27	54.25
CDY72512	Canola	nucleus	35.25	50.24
HORVU6Hr1G033840.5	Barley	mitochondrion	56.27	48.68
TraesCS6D01G155300.1	Wheat	mitochondrion	50.17	48.37
Bra028719.1-P	Field mustard	cytosol	23.73	44.87
CDY05002	Canola	cytosol	23.73	44.87
TraesCS6D01G155200.1	Wheat	cytosol	31.53	44.5
Zm00001d046740_P001	Maize	plastid	50.51	43.82
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	52.2	43.02
HORVU6Hr1G025870.1	Barley	cytosol	27.12	42.11
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	27.8	42.05
TraesCS6A01G166800.1	Wheat	cytosol	40.68	38.71
TraesCS6A01G166700.1	Wheat	cytosol	36.95	34.6
Zm00001d032312_P001	Maize	cytosol	16.61	33.11

Protein Annotations

EntrezGene:100777939	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	EMBL:ACUP02002025	EnsemblPlantsGene:GLYMA_03G144300
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	UniProt:I1JNK3
InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH67059
ProteinID:KRH67059	ProteinID:KRH67059.1	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	UniParc:UPI0000E6472E	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	:	:

Description

hypothetical protein

Coordinates

chr3:+:35998247..36002037

Molecular Weight (calculated)

31142.2 Da

IEP (calculated)

9.595

GRAVY (calculated)

-0.421

Length

295 amino acids

Sequence
(BLAST)

001: MDIRKRGRPE PGFSLNGGFK KSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY VPGGYNAVAH MMNLTPAAPL PPTRNVAALP HVPNGSAPSA
101: VKTRICNKFN TAEGCKFGDK CHFAHGEWEL GKHIAPSFDD HRAMGPPGAG RLAGRMEPPG PAASFGANST AKISVEASLA GAIIGKGGVN SKQICRQTGA
201: KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ MSAPPKTTPG VPGAPASHGS NFKTKLCENF AKGSCTFGDR CHFAHGASEL RKSGV

Best Arabidopsis Sequence Match ( AT5G06770.1 )
(BLAST)

001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.