CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93085	Soybean	cytosol	96.97	96.97
VIT_06s0004g01290.t01	Wine grape	cytosol	73.74	72.76
PGSC0003DMT400061829	Potato	plastid	50.17	66.82
Solyc01g014850.2.1	Tomato	nucleus	55.89	66.4
KRG95373	Soybean	cytosol	64.31	64.75
KRH67059	Soybean	cytosol, nucleus	63.64	64.07
KRH67057	Soybean	nucleus	63.3	63.73
KRH71867	Soybean	nucleus	62.29	62.71
GSMUA_Achr1P19650_001	Banana	nucleus	61.28	59.87
GSMUA_Achr7P20530_001	Banana	nucleus	59.93	59.53
Os02t0194200-01	Rice	nucleus	57.91	57.33
Zm00001d036796_P004	Maize	extracellular	57.58	56.81
TraesCS6B01G194300.1	Wheat	cytosol	56.23	56.23
KXG20371	Sorghum	cytosol	57.24	55.37
Os04t0665700-01	Rice	nucleus	57.58	55.34
TraesCS7D01G396100.2	Wheat	cytosol	55.89	55.33
EES04688	Sorghum	nucleus	54.88	55.25
Solyc01g014860.2.1	Tomato	nucleus	9.09	55.1
TraesCS7B01G302400.1	Wheat	cytosol	55.56	55.0
Os06t0618100-01	Rice	nucleus	47.81	54.83
TraesCS7A01G402300.1	Wheat	cytosol	55.22	54.67
TraesCS6D01G155400.1	Wheat	cytosol	55.89	54.61
TraesCS6A01G166900.1	Wheat	cytosol	55.56	54.28
TraesCS2D01G488300.1	Wheat	nucleus, plastid	54.88	53.62
TraesCS2A01G488000.1	Wheat	nucleus, plastid	54.88	53.27
TraesCS2B01G515600.1	Wheat	nucleus, plastid	54.88	53.09
Zm00001d001933_P001	Maize	nucleus	53.87	52.12
EES11610	Sorghum	cytosol	53.54	51.96
TraesCS6D01G155300.1	Wheat	mitochondrion	49.16	47.71
HORVU6Hr1G033840.5	Barley	mitochondrion	54.21	47.21
Zm00001d046740_P001	Maize	plastid	52.19	45.59
TraesCS6D01G155200.1	Wheat	cytosol	30.64	43.54
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	27.61	42.05
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	50.51	41.9
HORVU6Hr1G025870.1	Barley	cytosol	26.26	41.05
TraesCS6A01G166800.1	Wheat	cytosol	39.39	37.74
TraesCS6A01G166700.1	Wheat	cytosol	35.69	33.65
Zm00001d032312_P001	Maize	cytosol	15.82	31.76

Protein Annotations

EntrezGene:100792652	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	EMBL:ACUP02006723	EnsemblPlantsGene:GLYMA_10G296700
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	UniProt:I1LFK3
InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH36330
ProteinID:KRH36330	ProteinID:KRH36330.1	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF154	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	UniParc:UPI000233D7FE	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:51343315..51348138

Molecular Weight (calculated)

31637.5 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.478

Length

297 amino acids

Sequence
(BLAST)

001: MDRKRGRHEA AFNFNGGAKK SRPEMDSFPT GLGSKSKPCT KFFSTSGCPF GEGCHFLHYV PGGFKAVSQL INVGSNPVIP QVGRNPVPPS FPDGSSPPVV
101: KTRLCNKFNT AEGCKFGDKC HFAHGEWELG RPTAPSYEDP RVMGQMPSSR VGGRVEPPHP AHGAAASFGA SATAKISINA SLAGAVIGKN GVNSKQICRV
201: TGAKLSIRDH DTDPNLRNIE LEGSFDQIKQ ASAMVHEVIL NVSSASGPPM KSFTSQNSAP ASNFKTKLCE NFAKGSCTFG ERCHFAHGND ELRKSGM

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.