CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG90774
KRH35987

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	KRG90774	AT5G04280.1	21798944
AT5G06770.1	KRH35987	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67059	Soybean	cytosol, nucleus	97.97	97.97
KRG95373	Soybean	cytosol	93.9	93.9
KRH71867	Soybean	nucleus	83.73	83.73
VIT_08s0007g06400.t01	Wine grape	cytosol	73.9	73.4
VIT_11s0016g04280.t01	Wine grape	cytosol	32.54	70.07
Solyc10g078750.1.1	Tomato	nucleus	67.12	67.58
PGSC0003DMT400029683	Potato	cytosol	68.47	67.11
PGSC0003DMT400060957	Potato	cytosol	66.1	66.33
Solyc10g080480.1.1	Tomato	nucleus	64.41	65.74
CDY47892	Canola	cytosol	50.85	65.22
PGSC0003DMT400025445	Potato	cytosol	62.71	65.14
Bra001436.1-P	Field mustard	cytosol	51.53	64.68
CDX73836	Canola	cytosol	50.85	63.83
CDY01104	Canola	cytosol	51.53	63.33
KRH36330	Soybean	nucleus	63.73	63.3
KRG93085	Soybean	cytosol	63.39	62.96
AT5G06770.1	Thale cress	cytosol	51.19	62.92
AT3G12130.1	Thale cress	cytosol	52.88	62.9
CDY00756	Canola	cytosol	50.17	62.71
CDY08453	Canola	cytosol	51.86	62.7
Bra034776.1-P	Field mustard	cytosol	51.86	62.7
GSMUA_Achr7P20530_001	Banana	nucleus	63.05	62.21
Solyc03g063200.2.1	Tomato	nucleus	32.54	58.9
GSMUA_Achr1P19650_001	Banana	nucleus	60.34	58.55
Os02t0194200-01	Rice	nucleus	58.98	58.0
Os04t0665700-01	Rice	nucleus	60.0	57.28
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	47.46	57.14
TraesCS7A01G402300.1	Wheat	cytosol	57.97	57.0
TraesCS7B01G302400.1	Wheat	cytosol	57.97	57.0
TraesCS7D01G396100.2	Wheat	cytosol	57.97	57.0
Zm00001d036796_P004	Maize	extracellular	57.97	56.81
Os06t0618100-01	Rice	nucleus	49.83	56.76
TraesCS6B01G194300.1	Wheat	cytosol	56.95	56.57
Zm00001d001933_P001	Maize	nucleus	58.64	56.35
TraesCS6A01G166900.1	Wheat	cytosol	57.63	55.92
EES11610	Sorghum	cytosol	57.97	55.88
KXG20371	Sorghum	cytosol	57.63	55.37
TraesCS2D01G488300.1	Wheat	nucleus, plastid	56.95	55.26
EES04688	Sorghum	nucleus	55.25	55.25
TraesCS6D01G155400.1	Wheat	cytosol	56.61	54.93
TraesCS2B01G515600.1	Wheat	nucleus, plastid	56.95	54.72
TraesCS2A01G488000.1	Wheat	nucleus, plastid	56.61	54.58
CDY72512	Canola	nucleus	36.27	51.69
HORVU6Hr1G033840.5	Barley	mitochondrion	56.27	48.68
TraesCS6D01G155300.1	Wheat	mitochondrion	50.17	48.37
CDY05002	Canola	cytosol	24.41	46.15
Bra028719.1-P	Field mustard	cytosol	24.41	46.15
TraesCS6D01G155200.1	Wheat	cytosol	31.53	44.5
Zm00001d046740_P001	Maize	plastid	50.85	44.12
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	52.54	43.3
HORVU6Hr1G025870.1	Barley	cytosol	27.12	42.11
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	27.8	42.05
TraesCS6A01G166800.1	Wheat	cytosol	40.68	38.71
TraesCS6A01G166700.1	Wheat	cytosol	37.29	34.92
Zm00001d032312_P001	Maize	cytosol	16.61	33.11

Protein Annotations

EntrezGene:100778470	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	EMBL:ACUP02002025	EnsemblPlantsGene:GLYMA_03G144200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	UniProt:I1JNK1
InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH67057
ProteinID:KRH67057	ProteinID:KRH67057.1	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	UniParc:UPI000233A19F	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	:	:

Description

hypothetical protein

Coordinates

chr3:+:35987020..35990816

Molecular Weight (calculated)

31165.1 Da

IEP (calculated)

9.417

GRAVY (calculated)

-0.440

Length

295 amino acids

Sequence
(BLAST)

001: MDIRKRGRHE TGFSLNGGFK RSKQEMESLS TGVGSKSKPC TKFFSTAGCP FGEGCHFLHY VPGGYNAVAH MMNLTPAAPP PPSRNVAALP HVPNGSAPSA
101: VKTRICNKFN TAEGCKFGDK CHFAHGEWEL GKHIAPSFDD HHAMGPPGAG RLAGRMEPPG PAASFGANST AKISVEASLA GAIIGKGGVN SKQICRQTGA
201: KLSIREHESD PNLRNIELEG SFEQIKEASN MVKDLLLTLQ MSAPPKTTPG VPGAPASHGS NFKTKLCENF AKGSCTFGDR CHFAHGASEL RKSGV

Best Arabidopsis Sequence Match ( AT5G06770.1 )
(BLAST)

001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.