Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08453 | Canola | cytosol | 99.17 | 97.54 |
| CDX73836 | Canola | cytosol | 86.25 | 88.09 |
| CDY00756 | Canola | cytosol | 85.83 | 87.29 |
| AT3G12130.1 | Thale cress | cytosol | 86.67 | 83.87 |
| CDY47892 | Canola | cytosol | 80.0 | 83.48 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 66.67 | 53.87 |
| KRG95373 | Soybean | cytosol | 65.0 | 52.88 |
| KRH67059 | Soybean | cytosol, nucleus | 63.75 | 51.86 |
| Solyc10g078750.1.1 | Tomato | nucleus | 62.92 | 51.54 |
| KRH67057 | Soybean | nucleus | 63.33 | 51.53 |
| Solyc10g080480.1.1 | Tomato | nucleus | 61.67 | 51.21 |
| CDY72512 | Canola | nucleus | 44.17 | 51.21 |
| PGSC0003DMT400025445 | Potato | cytosol | 60.42 | 51.06 |
| PGSC0003DMT400060957 | Potato | cytosol | 62.5 | 51.02 |
| PGSC0003DMT400029683 | Potato | cytosol | 63.33 | 50.5 |
| KRH71867 | Soybean | nucleus | 60.83 | 49.49 |
| Os02t0194200-01 | Rice | nucleus | 60.42 | 48.33 |
| CDY05002 | Canola | cytosol | 30.83 | 47.44 |
| KXG20371 | Sorghum | cytosol | 60.42 | 47.23 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 59.58 | 47.04 |
| Zm00001d036796_P004 | Maize | extracellular | 58.75 | 46.84 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 57.92 | 46.49 |
| EES11610 | Sorghum | cytosol | 59.17 | 46.41 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 57.92 | 46.33 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 57.92 | 46.33 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 57.92 | 46.33 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 57.08 | 46.13 |
| Zm00001d001933_P001 | Maize | nucleus | 58.75 | 45.93 |
| Os06t0618100-01 | Rice | nucleus | 49.17 | 45.56 |
| EES04688 | Sorghum | nucleus | 55.42 | 45.08 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 57.08 | 45.07 |
| Os04t0665700-01 | Rice | nucleus | 57.92 | 44.98 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 56.67 | 44.74 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 25.0 | 43.8 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 55.0 | 43.0 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 54.58 | 42.81 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 53.75 | 42.43 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 35.83 | 41.15 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 55.83 | 39.3 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 49.17 | 38.56 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 30.42 | 38.42 |
| Zm00001d046740_P001 | Maize | plastid | 51.67 | 36.47 |
| Solyc03g063200.2.1 | Tomato | nucleus | 24.17 | 35.58 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 50.0 | 33.52 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 42.5 | 32.38 |
| Zm00001d032312_P001 | Maize | cytosol | 19.17 | 31.08 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 34.58 | 26.77 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 21.67 | 26.67 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:A0A078EK57 | EnsemblPlants:CDY01104 | ProteinID:CDY01104 |
| ProteinID:CDY01104.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0046872 | EnsemblPlantsGene:GSBRNA2T00111155001 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF5 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI0004EEDDBD |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
BnaC05g40960D
Coordinates
chrLK031923:-:1174898..1177264
Molecular Weight (calculated)
25114.7 Da
IEP (calculated)
10.101
GRAVY (calculated)
-0.652
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARKRGRPE AGSFNSNGGG FKKSKQEMES GLGSKSKPCT KFFSTSGCPF GENCHFLHFV PGGYNPMAQM TNMGSPMSQV SRNMQGGGGG GGRFSGRGES
101: GPGHVSSFGA SATAKISVDA SLAGAIIGKG GVCSKQICRQ TGAKLSIQDH ERDPNLKNIE LEGTFEQINE ASAMVRELIG RLNSASRRPP GGGGGGLGSE
201: GKPHPGSNFK TKMCERFSKG SCTFGDRCHF AHGEAELRRS
101: GPGHVSSFGA SATAKISVDA SLAGAIIGKG GVCSKQICRQ TGAKLSIQDH ERDPNLKNIE LEGTFEQINE ASAMVRELIG RLNSASRRPP GGGGGGLGSE
201: GKPHPGSNFK TKMCERFSKG SCTFGDRCHF AHGEAELRRS
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.