Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g071560.2.1 | |
| Solyc11g008210.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | Solyc03g071560.2.1 | AT5G04280.1 | 21798944 |
| AT5G06770.1 | Solyc11g008210.1.1 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029683 | Potato | cytosol | 95.22 | 92.69 |
| Solyc10g080480.1.1 | Tomato | nucleus | 75.77 | 76.82 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 69.62 | 68.69 |
| KRG95373 | Soybean | cytosol | 68.94 | 68.47 |
| KRH67059 | Soybean | cytosol, nucleus | 67.92 | 67.46 |
| KRH67057 | Soybean | nucleus | 67.58 | 67.12 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 30.38 | 64.96 |
| KRH71867 | Soybean | nucleus | 65.19 | 64.75 |
| CDY47892 | Canola | cytosol | 49.83 | 63.48 |
| CDY01104 | Canola | cytosol | 51.54 | 62.92 |
| Bra001436.1-P | Field mustard | cytosol | 50.17 | 62.55 |
| Bra034776.1-P | Field mustard | cytosol | 51.54 | 61.89 |
| CDY08453 | Canola | cytosol | 51.54 | 61.89 |
| CDX73836 | Canola | cytosol | 49.15 | 61.28 |
| CDY00756 | Canola | cytosol | 48.46 | 60.17 |
| AT3G12130.1 | Thale cress | cytosol | 50.51 | 59.68 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 61.09 | 58.88 |
| AT5G06770.1 | Thale cress | cytosol | 48.12 | 58.75 |
| Solyc01g014850.2.1 | Tomato | nucleus | 49.49 | 58.0 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 58.7 | 57.53 |
| Solyc03g063200.2.1 | Tomato | nucleus | 31.74 | 57.06 |
| Os02t0194200-01 | Rice | nucleus | 57.34 | 56.0 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 46.76 | 55.92 |
| Os06t0618100-01 | Rice | nucleus | 47.78 | 54.05 |
| Os04t0665700-01 | Rice | nucleus | 56.66 | 53.72 |
| EES04688 | Sorghum | nucleus | 53.92 | 53.56 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 53.92 | 53.2 |
| Zm00001d036796_P004 | Maize | extracellular | 54.61 | 53.16 |
| KXG20371 | Sorghum | cytosol | 55.63 | 53.09 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 54.27 | 52.3 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 53.58 | 51.64 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 52.56 | 51.33 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 52.56 | 51.33 |
| EES11610 | Sorghum | cytosol | 53.58 | 51.31 |
| Solyc01g073940.2.1 | Tomato | nucleus | 50.51 | 51.21 |
| Solyc01g014860.2.1 | Tomato | nucleus | 8.53 | 51.02 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 52.22 | 51.0 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 52.9 | 50.99 |
| Zm00001d001933_P001 | Maize | nucleus | 53.24 | 50.81 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 52.56 | 50.16 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 52.22 | 50.0 |
| CDY72512 | Canola | nucleus | 34.13 | 48.31 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 48.81 | 46.73 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 53.24 | 45.75 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 32.08 | 44.98 |
| CDY05002 | Canola | cytosol | 23.21 | 43.59 |
| Bra028719.1-P | Field mustard | cytosol | 23.21 | 43.59 |
| Zm00001d046740_P001 | Maize | plastid | 49.49 | 42.65 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 50.17 | 41.06 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 26.62 | 41.05 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 27.3 | 41.03 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 38.57 | 36.45 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 36.18 | 33.65 |
| Zm00001d032312_P001 | Maize | cytosol | 16.04 | 31.76 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | UniProt:K4D2B7 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:Solyc10g078750.1 | EnsemblPlants:Solyc10g078750.1.1 | UniParc:UPI000276A3E3 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
No Description!
Coordinates
chr10:+:60475651..60478736
Molecular Weight (calculated)
30562.3 Da
IEP (calculated)
9.628
GRAVY (calculated)
-0.437
Length
293 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFRKRSRNG AGSNFNGGLK KSKPEMDSLS GGIGSKTKPC TKFFSIAGCP FGESCHFLHH VPGGYNAVAQ MMNLGSAPAS RNVAAPPMSN GNAPAVKTKL
101: CNKFNTAEGC KFGDACNFAH GEWQIGKPIV PSQEDPRAMG VGPAPSRFGG RTEPAVSGPA SSFGTTATAK ISVDASLAGA IIGKGGVNSK QICRQTGAKL
201: AIREHETDTN LRNIELEGTF EQISQASAMV RELINSLGPV GGPGRDPAGR GGPAPPMNNY KTKLCENFAK GSCTFGDRCH FAHGDAEMRK TGV
101: CNKFNTAEGC KFGDACNFAH GEWQIGKPIV PSQEDPRAMG VGPAPSRFGG RTEPAVSGPA SSFGTTATAK ISVDASLAGA IIGKGGVNSK QICRQTGAKL
201: AIREHETDTN LRNIELEGTF EQISQASAMV RELINSLGPV GGPGRDPAGR GGPAPPMNNY KTKLCENFAK GSCTFGDRCH FAHGDAEMRK TGV
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.