Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G396100.2 | Wheat | cytosol | 99.33 | 99.33 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 99.33 | 99.33 |
| Zm00001d036796_P004 | Maize | extracellular | 81.0 | 80.73 |
| Os06t0618100-01 | Rice | nucleus | 67.67 | 78.38 |
| KXG20371 | Sorghum | cytosol | 79.67 | 77.85 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 44.0 | 69.47 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 69.67 | 68.75 |
| Zm00001d046740_P001 | Maize | plastid | 72.33 | 63.82 |
| KRG95373 | Soybean | cytosol | 58.0 | 58.98 |
| CDY47892 | Canola | cytosol | 45.0 | 58.7 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 58.0 | 58.19 |
| KRH67057 | Soybean | nucleus | 57.0 | 57.97 |
| KRH67059 | Soybean | cytosol, nucleus | 57.0 | 57.97 |
| CDY01104 | Canola | cytosol | 46.33 | 57.92 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 58.33 | 57.57 |
| Bra001436.1-P | Field mustard | cytosol | 45.0 | 57.45 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 57.33 | 57.14 |
| CDY00756 | Canola | cytosol | 44.67 | 56.78 |
| CDX73836 | Canola | cytosol | 44.33 | 56.6 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 56.0 | 56.57 |
| Bra034776.1-P | Field mustard | cytosol | 46.0 | 56.56 |
| CDY08453 | Canola | cytosol | 46.0 | 56.56 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 55.67 | 56.42 |
| AT5G06770.1 | Thale cress | cytosol | 44.67 | 55.83 |
| KRH71867 | Soybean | nucleus | 54.67 | 55.59 |
| KRH36330 | Soybean | nucleus | 54.67 | 55.22 |
| KRG93085 | Soybean | cytosol | 54.67 | 55.22 |
| AT3G12130.1 | Thale cress | cytosol | 45.0 | 54.44 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 54.67 | 53.59 |
| PGSC0003DMT400060957 | Potato | cytosol | 52.33 | 53.4 |
| Solyc10g080480.1.1 | Tomato | nucleus | 51.33 | 53.29 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 24.0 | 52.55 |
| Solyc01g014850.2.1 | Tomato | nucleus | 43.67 | 52.4 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 42.67 | 52.24 |
| Solyc10g078750.1.1 | Tomato | nucleus | 51.0 | 52.22 |
| PGSC0003DMT400029683 | Potato | cytosol | 52.33 | 52.16 |
| PGSC0003DMT400025445 | Potato | cytosol | 49.0 | 51.76 |
| PGSC0003DMT400061829 | Potato | plastid | 38.33 | 51.57 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 49.67 | 48.06 |
| PGSC0003DMT400016195 | Potato | cytosol | 46.0 | 47.75 |
| Solyc01g073940.2.1 | Tomato | nucleus | 45.33 | 47.06 |
| Solyc03g063200.2.1 | Tomato | nucleus | 24.0 | 44.17 |
| CDY72512 | Canola | nucleus | 29.33 | 42.51 |
| Solyc01g014860.2.1 | Tomato | nucleus | 6.67 | 40.82 |
| Bra028719.1-P | Field mustard | cytosol | 20.67 | 39.74 |
| CDY05002 | Canola | cytosol | 20.67 | 39.74 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 41.33 | 39.37 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF147 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | EnsemblPlantsGene:TraesCS7A01G402300 |
| EnsemblPlants:TraesCS7A01G402300.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd00105 | SEG:seg | : |
Description
No Description!
Coordinates
chr7A:+:581429775..581432393
Molecular Weight (calculated)
31091.1 Da
IEP (calculated)
10.278
GRAVY (calculated)
-0.526
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGRKRAVP EGTNGGAAVK RARAESESVQ TGVGSKSKPC TKFFSTAGCP FGSSCHFLHN FPGGHQAVSK MTNLGGPAVS APQGRMPMGP GVPDGPPTPS
101: LKTRLCNKFN TAEGCKWGNK CHFAHGEREL GKPMLLNNSM APPMGPRPNG HFQPSPMPGP DMVPPSTFGA SATAKISVDA SLAGAIIGKG GVNTKHISRM
201: TGAKLAIRDN EADPNHKNIE LEGSFDQVNH ASAMVKELIL RIGGNAPPQA KNPGRGPAGG GGGSNFKTKL CDNFNKGSCT FGDRCHFAHG ESELRKSAAA
101: LKTRLCNKFN TAEGCKWGNK CHFAHGEREL GKPMLLNNSM APPMGPRPNG HFQPSPMPGP DMVPPSTFGA SATAKISVDA SLAGAIIGKG GVNTKHISRM
201: TGAKLAIRDN EADPNHKNIE LEGSFDQVNH ASAMVKELIL RIGGNAPPQA KNPGRGPAGG GGGSNFKTKL CDNFNKGSCT FGDRCHFAHG ESELRKSAAA
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.