Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 76.01 | 74.75 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 70.27 | 70.03 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 31.76 | 68.61 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 64.53 | 63.88 |
| Os02t0194200-01 | Rice | nucleus | 63.51 | 62.67 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 64.19 | 62.5 |
| EES04688 | Sorghum | nucleus | 59.8 | 60.0 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 59.46 | 59.26 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 60.47 | 58.88 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 60.14 | 58.55 |
| Zm00001d036796_P004 | Maize | extracellular | 59.12 | 58.14 |
| Os04t0665700-01 | Rice | nucleus | 60.47 | 57.93 |
| PGSC0003DMT400016195 | Potato | cytosol | 56.08 | 57.44 |
| KXG20371 | Sorghum | cytosol | 58.78 | 56.68 |
| Os06t0618100-01 | Rice | nucleus | 49.32 | 56.37 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 56.76 | 56.0 |
| EES11610 | Sorghum | cytosol | 57.77 | 55.88 |
| Solyc01g073940.2.1 | Tomato | nucleus | 54.39 | 55.71 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 56.42 | 55.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 56.42 | 55.67 |
| Zm00001d001933_P001 | Maize | nucleus | 57.09 | 55.05 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 55.41 | 53.95 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 54.73 | 52.77 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 54.39 | 52.61 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 52.03 | 50.33 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 56.42 | 48.97 |
| Zm00001d046740_P001 | Maize | plastid | 52.36 | 45.59 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 31.42 | 44.5 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 28.72 | 43.59 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 52.7 | 43.58 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 27.03 | 42.11 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 41.89 | 40.0 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 37.16 | 34.92 |
| Zm00001d032312_P001 | Maize | cytosol | 17.23 | 34.46 |
Protein Annotations
| EntrezGene:100240955 | wikigene:100240955 | MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | UniProt:A5AP98 |
| EMBL:AM431318 | ProteinID:CAN75883 | ProteinID:CAN75883.1 | ProteinID:CCB56694 | ProteinID:CCB56694.1 | EMBL:FN596003 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | EntrezGene:LOC100240955 | wikigene:LOC100240955 |
| PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF154 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI000151EFC8 |
| ArrayExpress:VIT_13s0156g00320 | EnsemblPlantsGene:VIT_13s0156g00320 | EnsemblPlants:VIT_13s0156g00320.t01 | unigene:Vvi.13807 | RefSeq:XP_002273052 | RefSeq:XP_002273052.1 |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr13:-:24053891..24059493
Molecular Weight (calculated)
30960.0 Da
IEP (calculated)
9.605
GRAVY (calculated)
-0.405
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVGGKRRGR PDGAAFGNGG FKKSKQETES FSTGIGSKSK PCTKFFSTSG CPFGEGCHFL HYVPGGYSAV TQMTNLGGNP AMPPIARNPM APPTIPDGPP
101: TVKTRICNKF NTPEGCKFGD KCHFAHGELE LGRPIVPTHE DPRAMGPMGG RLAGRLEAPP PGLAAAASFG ASATAKISVD ASLAGAIIGK GGVNSKQICR
201: LTGVKLSIKE HESDPNQRNI ELEGTFDQIK QASAMVRELI FNIGSAAGHA KNPTGSAASA NNFKTKMCDN FAKGSCTFGD RCHFAHGANE LRKPVA
101: TVKTRICNKF NTPEGCKFGD KCHFAHGELE LGRPIVPTHE DPRAMGPMGG RLAGRLEAPP PGLAAAASFG ASATAKISVD ASLAGAIIGK GGVNSKQICR
201: LTGVKLSIKE HESDPNQRNI ELEGTFDQIK QASAMVRELI FNIGSAAGHA KNPTGSAASA NNFKTKMCDN FAKGSCTFGD RCHFAHGANE LRKPVA
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.