Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G166900.1 | Wheat | cytosol | 97.7 | 97.7 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 93.42 | 95.62 |
| Os02t0194200-01 | Rice | nucleus | 79.61 | 80.67 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 79.28 | 78.76 |
| EES04688 | Sorghum | nucleus | 73.03 | 75.25 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 81.58 | 72.73 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 69.74 | 70.67 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 58.88 | 60.47 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 59.21 | 59.21 |
| CDY47892 | Canola | cytosol | 44.41 | 58.7 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 57.89 | 58.47 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 56.91 | 58.25 |
| Bra001436.1-P | Field mustard | cytosol | 44.74 | 57.87 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 57.57 | 57.57 |
| CDY01104 | Canola | cytosol | 45.07 | 57.08 |
| CDX73836 | Canola | cytosol | 44.08 | 57.02 |
| CDY08453 | Canola | cytosol | 45.72 | 56.97 |
| Bra034776.1-P | Field mustard | cytosol | 45.72 | 56.97 |
| KRG95373 | Soybean | cytosol | 55.26 | 56.95 |
| KRH67057 | Soybean | nucleus | 54.93 | 56.61 |
| CDY00756 | Canola | cytosol | 43.75 | 56.36 |
| KRH67059 | Soybean | cytosol, nucleus | 54.61 | 56.27 |
| AT5G06770.1 | Thale cress | cytosol | 44.41 | 56.25 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 55.26 | 56.19 |
| KRH36330 | Soybean | nucleus | 54.61 | 55.89 |
| KRH71867 | Soybean | nucleus | 53.95 | 55.59 |
| KRG93085 | Soybean | cytosol | 54.28 | 55.56 |
| PGSC0003DMT400060957 | Potato | cytosol | 53.62 | 55.44 |
| AT3G12130.1 | Thale cress | cytosol | 44.41 | 54.44 |
| Solyc10g080480.1.1 | Tomato | nucleus | 51.64 | 54.33 |
| Solyc10g078750.1.1 | Tomato | nucleus | 51.64 | 53.58 |
| Solyc01g014850.2.1 | Tomato | nucleus | 43.75 | 53.2 |
| PGSC0003DMT400025445 | Potato | cytosol | 49.67 | 53.17 |
| PGSC0003DMT400029683 | Potato | cytosol | 52.3 | 52.82 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 23.68 | 52.55 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 41.78 | 51.84 |
| PGSC0003DMT400061829 | Potato | plastid | 37.83 | 51.57 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 35.2 | 51.2 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 59.21 | 50.28 |
| PGSC0003DMT400016195 | Potato | cytosol | 47.37 | 49.83 |
| Solyc01g073940.2.1 | Tomato | nucleus | 47.04 | 49.48 |
| CDY72512 | Canola | nucleus | 31.58 | 46.38 |
| Solyc01g014860.2.1 | Tomato | nucleus | 7.24 | 44.9 |
| Solyc03g063200.2.1 | Tomato | nucleus | 24.01 | 44.79 |
| CDY05002 | Canola | cytosol | 22.37 | 43.59 |
| Bra028719.1-P | Field mustard | cytosol | 22.37 | 43.59 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF147 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | EnsemblPlantsGene:TraesCS6D01G155400 |
| EnsemblPlants:TraesCS6D01G155400.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd00105 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:131686612..131689236
Molecular Weight (calculated)
31502.3 Da
IEP (calculated)
9.951
GRAVY (calculated)
-0.503
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGGRKRGT ADGAAVGGKR TRESESFQTG VGSKSKPCTK FFSTSGCPFG EGCHFLHYFP GGHQAVAKMS NLGGQAFAHP QGRMPTGSAV PDGHPTPTVK
101: TKLCNKYNTA EGCKWGDKCH FAHGERELGK QTFINNSMPP HMGPRPTGHF GPPAMPSPGM ATPAGFGASS TAKVSVDASL AGAIIGRGGV NTKQISRVTG
201: AKLAIRDHES NEALKNIELE GTFDQINNAS AMLRELIFRI SGGANAPPPG VILAGGSQRG GGGGGQGSNF KTKLCDNFTK GSCTFGDRCH FAHGENELRK
301: SAAA
101: TKLCNKYNTA EGCKWGDKCH FAHGERELGK QTFINNSMPP HMGPRPTGHF GPPAMPSPGM ATPAGFGASS TAKVSVDASL AGAIIGRGGV NTKQISRVTG
201: AKLAIRDHES NEALKNIELE GTFDQINNAS AMLRELIFRI SGGANAPPPG VILAGGSQRG GGGGGQGSNF KTKLCDNFTK GSCTFGDRCH FAHGENELRK
301: SAAA
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.