Factsheet for PGSC0003DMT400029683

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043581
PGSC0003DMT400079815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	PGSC0003DMT400043581	AT5G04280.1	21798944
AT5G06770.1	PGSC0003DMT400079815	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g078750.1.1	Tomato	nucleus	92.69	95.22
PGSC0003DMT400060957	Potato	cytosol	77.41	79.25
PGSC0003DMT400025445	Potato	cytosol	70.1	74.3
KRG95373	Soybean	cytosol	68.44	69.83
VIT_08s0007g06400.t01	Wine grape	cytosol	68.11	69.02
KRH67059	Soybean	cytosol, nucleus	67.44	68.81
KRH67057	Soybean	nucleus	67.11	68.47
KRH71867	Soybean	nucleus	64.12	65.42
VIT_11s0016g04280.t01	Wine grape	cytosol	29.57	64.96
CDY47892	Canola	cytosol	49.17	64.35
CDY01104	Canola	cytosol	50.5	63.33
CDY08453	Canola	cytosol	51.16	63.11
Bra034776.1-P	Field mustard	cytosol	51.16	63.11
Bra001436.1-P	Field mustard	cytosol	48.84	62.55
CDX73836	Canola	cytosol	48.17	61.7
CDY00756	Canola	cytosol	47.51	60.59
AT5G06770.1	Thale cress	cytosol	47.84	60.0
GSMUA_Achr1P19650_001	Banana	nucleus	60.47	59.87
AT3G12130.1	Thale cress	cytosol	49.17	59.68
GSMUA_Achr7P20530_001	Banana	nucleus	57.81	58.19
PGSC0003DMT400061829	Potato	plastid	42.86	57.85
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	46.18	56.73
Os02t0194200-01	Rice	nucleus	56.48	56.67
Os04t0665700-01	Rice	nucleus	56.48	55.02
Zm00001d036796_P004	Maize	extracellular	54.82	54.82
KXG20371	Sorghum	cytosol	55.81	54.72
Os06t0618100-01	Rice	nucleus	46.51	54.05
EES04688	Sorghum	nucleus	52.82	53.9
TraesCS6B01G194300.1	Wheat	cytosol	53.16	53.87
TraesCS2B01G515600.1	Wheat	nucleus, plastid	53.82	52.77
TraesCS7D01G396100.2	Wheat	cytosol	52.49	52.67
TraesCS7B01G302400.1	Wheat	cytosol	52.49	52.67
TraesCS6A01G166900.1	Wheat	cytosol	53.16	52.63
TraesCS7A01G402300.1	Wheat	cytosol	52.16	52.33
TraesCS6D01G155400.1	Wheat	cytosol	52.82	52.3
EES11610	Sorghum	cytosol	53.16	52.29
Zm00001d001933_P001	Maize	nucleus	53.16	52.12
TraesCS2D01G488300.1	Wheat	nucleus, plastid	52.49	51.97
TraesCS2A01G488000.1	Wheat	nucleus, plastid	51.83	50.98
PGSC0003DMT400016195	Potato	cytosol	48.84	50.87
CDY72512	Canola	nucleus	33.22	48.31
TraesCS6D01G155300.1	Wheat	mitochondrion	48.51	47.71
HORVU6Hr1G033840.5	Barley	mitochondrion	52.82	46.63
TraesCS6D01G155200.1	Wheat	cytosol	31.23	44.98
CDY05002	Canola	cytosol	22.92	44.23
Bra028719.1-P	Field mustard	cytosol	22.92	44.23
Zm00001d046740_P001	Maize	plastid	49.5	43.82
HORVU6Hr1G025870.1	Barley	cytosol	26.58	42.11
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	49.83	41.9
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	26.25	40.51
TraesCS6A01G166800.1	Wheat	cytosol	36.88	35.81
TraesCS6A01G166700.1	Wheat	cytosol	35.22	33.65
Zm00001d032312_P001	Maize	cytosol	14.95	30.41

Protein Annotations

EntrezGene:102605825	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M1AT95	PFAM:PF00013	PFAM:PF00642	EnsemblPlantsGene:PGSC0003DMG400011414
PGSC:PGSC0003DMG400011414	EnsemblPlants:PGSC0003DMT400029683	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF5
SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI000296A4F0	RefSeq:XP_006362228.1
RefSeq:XP_006362229.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011414]

Coordinates

chr10:-:58934720..58938447

Molecular Weight (calculated)

31383.3 Da

IEP (calculated)

9.628

GRAVY (calculated)

-0.503

Length

301 amino acids

Sequence
(BLAST)

001: MDFRKRSRNE AGSNFNGGLK KSKPEMDSLS GGIGSKTKPC TKFFSTAGCP FGESCHFLHH VPGGYNAVAQ MMNLGSAPPA SRNVAAPPMS NGNAPAVKTK
101: LCNKFNTAEG CKFGDTCNFA HGEWQIGKPI MPSQEDPRAM GVGPAPSRFG GRTEPPVSGP AASFGTTATA KISVDSSLAG AIIGKGGVNS KQICRQTGAK
201: LAIREHETDI NLRNIELEGT FEQISQASAM VRELINSLGP VGGPGRAPSG HGRGPAGPGG PAPPMSNYKT KLCENFAKGS CTFGDRCHFA HGNDEMRKTG
301: T

Best Arabidopsis Sequence Match ( AT5G06770.1 )
(BLAST)

001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.