Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007799_P001 | |
| Zm00001d013543_P009 | |
| Zm00001d019041_P001 | |
| Zm00001d033511_P002 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES11610 | Sorghum | cytosol | 86.64 | 86.93 |
| Os04t0665700-01 | Rice | nucleus | 78.83 | 78.32 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 73.62 | 73.86 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 71.99 | 72.7 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 71.99 | 71.99 |
| CDY01104 | Canola | cytosol | 45.93 | 58.75 |
| KRH67057 | Soybean | nucleus | 56.35 | 58.64 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 57.0 | 58.53 |
| Bra001436.1-P | Field mustard | cytosol | 44.63 | 58.3 |
| CDX73836 | Canola | cytosol | 44.63 | 58.3 |
| CDY47892 | Canola | cytosol | 43.65 | 58.26 |
| Bra034776.1-P | Field mustard | cytosol | 46.25 | 58.2 |
| CDY08453 | Canola | cytosol | 46.25 | 58.2 |
| Zm00001d036796_P004 | Maize | extracellular | 57.0 | 58.14 |
| KRG95373 | Soybean | cytosol | 55.7 | 57.97 |
| KRH67059 | Soybean | cytosol, nucleus | 55.7 | 57.97 |
| KRH71867 | Soybean | nucleus | 55.7 | 57.97 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 57.33 | 57.89 |
| CDY00756 | Canola | cytosol | 44.3 | 57.63 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 55.7 | 57.58 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 55.05 | 57.09 |
| AT5G06770.1 | Thale cress | cytosol | 44.3 | 56.67 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 24.76 | 55.47 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 54.07 | 55.15 |
| AT3G12130.1 | Thale cress | cytosol | 44.3 | 54.84 |
| KRG93085 | Soybean | cytosol | 52.44 | 54.21 |
| KRH36330 | Soybean | nucleus | 52.12 | 53.87 |
| Solyc01g014850.2.1 | Tomato | nucleus | 43.65 | 53.6 |
| PGSC0003DMT400025445 | Potato | cytosol | 49.51 | 53.52 |
| Solyc10g078750.1.1 | Tomato | nucleus | 50.81 | 53.24 |
| PGSC0003DMT400029683 | Potato | cytosol | 52.12 | 53.16 |
| PGSC0003DMT400061829 | Potato | plastid | 38.44 | 52.91 |
| Solyc10g080480.1.1 | Tomato | nucleus | 48.86 | 51.9 |
| PGSC0003DMT400060957 | Potato | cytosol | 49.51 | 51.7 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 41.04 | 51.43 |
| CDY72512 | Canola | nucleus | 33.88 | 50.24 |
| PGSC0003DMT400016195 | Potato | cytosol | 43.65 | 46.37 |
| Solyc01g073940.2.1 | Tomato | nucleus | 43.0 | 45.67 |
| CDY05002 | Canola | cytosol | 23.13 | 45.51 |
| Bra028719.1-P | Field mustard | cytosol | 23.13 | 45.51 |
| Zm00001d046740_P001 | Maize | plastid | 49.84 | 45.0 |
| Solyc01g014860.2.1 | Tomato | nucleus | 7.17 | 44.9 |
| Solyc03g063200.2.1 | Tomato | nucleus | 23.45 | 44.17 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 49.19 | 42.18 |
| Zm00001d032312_P001 | Maize | cytosol | 19.87 | 41.22 |
Protein Annotations
| EntrezGene:100192020 | MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | UniProt:B4FB09 | EMBL:BT034297 |
| EMBL:EU964247 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | ProteinID:ONM12518.1 |
| PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF156 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI00017B68A5 |
| EnsemblPlantsGene:Zm00001d001933 | EnsemblPlants:Zm00001d001933_P001 | EnsemblPlants:Zm00001d001933_T001 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
C3H-transcription factor 316Zinc finger CCCH domain-containing protein 52
Coordinates
chr2:-:3097287..3101632
Molecular Weight (calculated)
31892.7 Da
IEP (calculated)
9.991
GRAVY (calculated)
-0.470
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGTAAARKR SRPETANGAA AAGKRSKDTE SFQTGLSSKS KPCTKFFSTI GCPFGEGCHF LHFVPGGYPA VAKMLNLSSS AVSAPSRTHV DHAALTGASH
101: PASTVKTRMC TKYNTTEGCK FGDKCHFAHS ERELAKPAYM SQEGPPMGGR YGRAEPMQPA AMGPPAGNFG ASATAKISVD ASLAGGIIGK GGVNTKQISR
201: ITGVKLSIRD HESNPNLKNI ELEGNFDQIK QASDLVRDLI ATISASMPAK NPSAAAAPAG GGRGGGPGGK SSNYKTKLCE NFLKGACTFG DRCHFAHGET
301: EQRRGAA
101: PASTVKTRMC TKYNTTEGCK FGDKCHFAHS ERELAKPAYM SQEGPPMGGR YGRAEPMQPA AMGPPAGNFG ASATAKISVD ASLAGGIIGK GGVNTKQISR
201: ITGVKLSIRD HESNPNLKNI ELEGNFDQIK QASDLVRDLI ATISASMPAK NPSAAAAPAG GGRGGGPGGK SSNYKTKLCE NFLKGACTFG DRCHFAHGET
301: EQRRGAA
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.