Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 96.05 | 95.42 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 94.41 | 93.49 |
| Os04t0665700-01 | Rice | nucleus | 77.63 | 76.38 |
| EES11610 | Sorghum | cytosol | 73.68 | 73.2 |
| Zm00001d001933_P001 | Maize | nucleus | 72.7 | 71.99 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 58.22 | 58.22 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 57.57 | 57.57 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 56.58 | 57.53 |
| KRH71867 | Soybean | nucleus | 55.59 | 57.29 |
| KRH67057 | Soybean | nucleus | 55.26 | 56.95 |
| KRH67059 | Soybean | cytosol, nucleus | 54.93 | 56.61 |
| KRG95373 | Soybean | cytosol | 54.61 | 56.27 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 55.26 | 56.0 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 54.93 | 55.48 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 53.95 | 55.41 |
| KRG93085 | Soybean | cytosol | 53.95 | 55.22 |
| KRH36330 | Soybean | nucleus | 53.62 | 54.88 |
| Solyc01g014850.2.1 | Tomato | nucleus | 45.07 | 54.8 |
| PGSC0003DMT400061829 | Potato | plastid | 40.13 | 54.71 |
| CDY47892 | Canola | cytosol | 41.12 | 54.35 |
| AT5G06770.1 | Thale cress | cytosol | 42.76 | 54.17 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 52.63 | 53.87 |
| CDY00756 | Canola | cytosol | 41.78 | 53.81 |
| CDY01104 | Canola | cytosol | 42.43 | 53.75 |
| CDX73836 | Canola | cytosol | 41.45 | 53.62 |
| Bra001436.1-P | Field mustard | cytosol | 41.12 | 53.19 |
| PGSC0003DMT400025445 | Potato | cytosol | 49.67 | 53.17 |
| Solyc10g078750.1.1 | Tomato | nucleus | 50.99 | 52.9 |
| CDY08453 | Canola | cytosol | 42.43 | 52.87 |
| Bra034776.1-P | Field mustard | cytosol | 42.43 | 52.87 |
| AT3G12130.1 | Thale cress | cytosol | 43.09 | 52.82 |
| PGSC0003DMT400029683 | Potato | cytosol | 51.97 | 52.49 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 23.36 | 51.82 |
| PGSC0003DMT400060957 | Potato | cytosol | 49.01 | 50.68 |
| Solyc10g080480.1.1 | Tomato | nucleus | 48.03 | 50.52 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 50.66 | 50.33 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 38.82 | 48.16 |
| PGSC0003DMT400016195 | Potato | cytosol | 44.08 | 46.37 |
| Solyc01g073940.2.1 | Tomato | nucleus | 43.75 | 46.02 |
| Solyc01g014860.2.1 | Tomato | nucleus | 7.24 | 44.9 |
| CDY72512 | Canola | nucleus | 29.93 | 43.96 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 29.61 | 43.06 |
| Solyc03g063200.2.1 | Tomato | nucleus | 23.03 | 42.94 |
| CDY05002 | Canola | cytosol | 21.71 | 42.31 |
| Bra028719.1-P | Field mustard | cytosol | 21.71 | 42.31 |
| Zm00001d032312_P001 | Maize | cytosol | 18.42 | 37.84 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 | PFscan:PS50084 | PFscan:PS50103 |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF156 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 |
| EnsemblPlantsGene:TraesCS2D01G488300 | EnsemblPlants:TraesCS2D01G488300.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | TIGR:cd00105 | SEG:seg |
Description
No Description!
Coordinates
chr2D:-:587701656..587704118
Molecular Weight (calculated)
31461.9 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.573
Length
304 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAAARKRSR PESANGGAAG GKRSRESESQ QTGLSSKSKP CTKFFSTVGC PFGEGCHFAH FVPGGYQAVS KSHSLGHAAV SAPSRAPADH AASGVKTRMC
101: TKYNTAEGCK FGDKCHFAHG ERELGRAPSS YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA GGIIGKGGVN TKQICRITGV
201: KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS ASTPSKNPAG AAAPAVRGGG GGGPGGRSNY KTKICENFLK GTCTFGERCH FAHGETEQRK
301: GAAV
101: TKYNTAEGCK FGDKCHFAHG ERELGRAPSS YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA GGIIGKGGVN TKQICRITGV
201: KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS ASTPSKNPAG AAAPAVRGGG GGGPGGRSNY KTKICENFLK GTCTFGERCH FAHGETEQRK
301: GAAV
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.