Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G12130.1 | Thale cress | cytosol | 72.08 | 69.76 |
| CDY72512 | Canola | nucleus | 46.67 | 54.11 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 64.17 | 51.85 |
| KRH67057 | Soybean | nucleus | 62.92 | 51.19 |
| KRH67059 | Soybean | cytosol, nucleus | 62.5 | 50.85 |
| KRG95373 | Soybean | cytosol | 62.08 | 50.51 |
| Solyc10g080480.1.1 | Tomato | nucleus | 59.58 | 49.48 |
| PGSC0003DMT400060957 | Potato | cytosol | 60.42 | 49.32 |
| PGSC0003DMT400025445 | Potato | cytosol | 57.5 | 48.59 |
| Solyc10g078750.1.1 | Tomato | nucleus | 58.75 | 48.12 |
| Bra028719.1-P | Field mustard | cytosol | 31.25 | 48.08 |
| CDY05002 | Canola | cytosol | 31.25 | 48.08 |
| PGSC0003DMT400029683 | Potato | cytosol | 60.0 | 47.84 |
| KRH71867 | Soybean | nucleus | 58.33 | 47.46 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 55.83 | 45.12 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 56.25 | 45.0 |
| KXG20371 | Sorghum | cytosol | 57.5 | 44.95 |
| Zm00001d036796_P004 | Maize | extracellular | 56.25 | 44.85 |
| EES11610 | Sorghum | cytosol | 57.08 | 44.77 |
| Os02t0194200-01 | Rice | nucleus | 55.83 | 44.67 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 55.83 | 44.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 55.83 | 44.67 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 56.25 | 44.41 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 56.25 | 44.41 |
| Os04t0665700-01 | Rice | nucleus | 57.08 | 44.34 |
| Zm00001d001933_P001 | Maize | nucleus | 56.67 | 44.3 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 55.83 | 44.08 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 54.58 | 43.81 |
| Os06t0618100-01 | Rice | nucleus | 47.08 | 43.63 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 54.17 | 42.76 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 54.58 | 42.67 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 53.75 | 42.16 |
| EES04688 | Sorghum | nucleus | 50.83 | 41.36 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 34.58 | 39.71 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 54.17 | 38.12 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 30.0 | 37.89 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 21.25 | 37.23 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 46.25 | 36.27 |
| Zm00001d046740_P001 | Maize | plastid | 50.0 | 35.29 |
| Solyc03g063200.2.1 | Tomato | nucleus | 23.33 | 34.36 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 42.92 | 32.7 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 46.67 | 31.28 |
| Zm00001d032312_P001 | Maize | cytosol | 18.33 | 29.73 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 33.75 | 26.13 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 20.42 | 25.13 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | EntrezGene:830566 | ProteinID:AED91063.1 | EMBL:AK117974 |
| ArrayExpress:AT5G06770 | EnsemblPlantsGene:AT5G06770 | RefSeq:AT5G06770 | TAIR:AT5G06770 | RefSeq:AT5G06770-TAIR-G | EnsemblPlants:AT5G06770.1 |
| TAIR:AT5G06770.1 | EMBL:AY086759 | Unigene:At.43568 | ProteinID:BAB09811.1 | EMBL:BT005260 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:1900057 |
| InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | RefSeq:NP_196295.1 |
| PFAM:PF00013 | PFAM:PF00642 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF5 |
| UniProt:Q9FG30 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI000000C5B1 |
| InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg | : | : | : |
Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
Coordinates
chr5:-:2090703..2093001
Molecular Weight (calculated)
25369.1 Da
IEP (calculated)
10.168
GRAVY (calculated)
-0.627
Length
240 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.