Factsheet for TraesCS2B01G515600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G237400.1
TraesCS2B01G259400.1
TraesCS2D01G238900.1
TraesCS4A01G288500.1
TraesCS4B01G026400.1
TraesCS4D01G023800.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	TraesCS2A01G237400.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS2B01G259400.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS2D01G238900.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS4A01G288500.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS4B01G026400.1	AT5G04280.1	21798944
AT5G06770.1	TraesCS4D01G023800.2	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G488000.1	Wheat	nucleus, plastid	94.14	94.44
TraesCS2D01G488300.1	Wheat	nucleus, plastid	93.49	94.41
Os04t0665700-01	Rice	nucleus	76.55	76.05
EES11610	Sorghum	cytosol	71.99	72.22
Zm00001d001933_P001	Maize	nucleus	71.99	71.99
GSMUA_Achr1P19650_001	Banana	nucleus	57.33	57.89
GSMUA_Achr7P20530_001	Banana	nucleus	56.35	57.86
TraesCS6B01G194300.1	Wheat	cytosol	55.7	57.58
KRH71867	Soybean	nucleus	55.05	57.29
KRH67057	Soybean	nucleus	54.72	56.95
KRG95373	Soybean	cytosol	54.72	56.95
KRH67059	Soybean	cytosol, nucleus	54.4	56.61
CDY47892	Canola	cytosol	42.35	56.52
TraesCS7B01G302400.1	Wheat	cytosol	55.05	56.33
KRG93085	Soybean	cytosol	53.42	55.22
CDY01104	Canola	cytosol	43.0	55.0
CDY08453	Canola	cytosol	43.65	54.92
Bra034776.1-P	Field mustard	cytosol	43.65	54.92
CDX73836	Canola	cytosol	42.02	54.89
VIT_08s0007g06400.t01	Wine grape	cytosol	53.09	54.88
KRH36330	Soybean	nucleus	53.09	54.88
Solyc01g014850.2.1	Tomato	nucleus	44.63	54.8
VIT_13s0156g00320.t01	Wine grape	cytosol	52.77	54.73
CDY00756	Canola	cytosol	42.02	54.66
AT5G06770.1	Thale cress	cytosol	42.67	54.58
VIT_06s0004g01290.t01	Wine grape	cytosol	53.42	54.49
Bra001436.1-P	Field mustard	cytosol	41.37	54.04
AT3G12130.1	Thale cress	cytosol	43.65	54.03
PGSC0003DMT400029683	Potato	cytosol	52.77	53.82
PGSC0003DMT400061829	Potato	plastid	39.09	53.81
PGSC0003DMT400025445	Potato	cytosol	49.51	53.52
Solyc10g078750.1.1	Tomato	nucleus	50.16	52.56
VIT_11s0016g04280.t01	Wine grape	cytosol	23.45	52.55
PGSC0003DMT400060957	Potato	cytosol	49.19	51.36
Solyc10g080480.1.1	Tomato	nucleus	48.21	51.21
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	39.74	49.8
PGSC0003DMT400016195	Potato	cytosol	43.65	46.37
Solyc01g073940.2.1	Tomato	nucleus	43.32	46.02
Solyc01g014860.2.1	Tomato	nucleus	7.17	44.9
CDY72512	Canola	nucleus	29.64	43.96
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	27.69	43.59
Solyc03g063200.2.1	Tomato	nucleus	22.8	42.94
CDY05002	Canola	cytosol	21.5	42.31
Bra028719.1-P	Field mustard	cytosol	21.5	42.31
Zm00001d032312_P001	Maize	cytosol	18.24	37.84
TraesCS6B01G194100.1	Wheat	nucleus	20.85	31.37

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFAM:PF00642	PFAM:PF14608	PFscan:PS50084	PFscan:PS50103
PANTHER:PTHR10288	PANTHER:PTHR10288:SF156	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229
EnsemblPlantsGene:TraesCS2B01G515600	EnsemblPlants:TraesCS2B01G515600.1	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	TIGR:cd00105	SEG:seg

Description

No Description!

Coordinates

chr2B:-:710285703..710288296

Molecular Weight (calculated)

31637.0 Da

IEP (calculated)

9.627

GRAVY (calculated)

-0.603

Length

307 amino acids

Sequence
(BLAST)

001: MDAAARKRSR PESANGGSAG GKRSRESESQ QTGLSSKSKP CTKFFSTVGC PFGEGCHFAH FVPGGYQAVS KSHSLGHAAV SAASRAPADH AASGVKTRMC
101: TKYNTAEGCK FGDKCHFAHG ERELGRPPSS YMSQESSYAP PMGGRYGGRH EPPPPASMGP PAGNFGASST CKVSVDAALA GGIIGKGGVN TKQICRITGV
201: KLSIRDHESN PDLKNIELEG SFDQIKQAND MVRDLIASIS ASTPSKNPAG TAAPAGRGGG GGGGGGPGGR SNYKTKICEN FLKGTCTFGE RCHFAHGETE
301: QRKGAAV

Best Arabidopsis Sequence Match ( AT5G06770.1 )
(BLAST)

001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA

Arabidopsis Description

Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.