Factsheet for PGSC0003DMT400061829

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014850.2.1	Tomato	nucleus	90.58	80.8
KRG93085	Soybean	cytosol	67.26	50.51
VIT_06s0004g01290.t01	Wine grape	cytosol	68.16	50.5
KRH36330	Soybean	nucleus	66.82	50.17
GSMUA_Achr7P20530_001	Banana	nucleus	61.44	45.82
PGSC0003DMT400060957	Potato	cytosol	59.19	44.9
Os06t0618100-01	Rice	nucleus	51.57	44.4
PGSC0003DMT400025445	Potato	cytosol	56.05	44.01
GSMUA_Achr1P19650_001	Banana	nucleus	59.19	43.42
PGSC0003DMT400029683	Potato	cytosol	57.85	42.86
Os02t0194200-01	Rice	nucleus	55.61	41.33
EES04688	Sorghum	nucleus	53.81	40.68
Os04t0665700-01	Rice	nucleus	56.05	40.45
TraesCS2D01G488300.1	Wheat	nucleus, plastid	54.71	40.13
TraesCS2A01G488000.1	Wheat	nucleus, plastid	54.26	39.54
PGSC0003DMT400016195	Potato	cytosol	50.67	39.1
TraesCS2B01G515600.1	Wheat	nucleus, plastid	53.81	39.09
TraesCS6B01G194300.1	Wheat	cytosol	52.02	39.06
TraesCS7B01G302400.1	Wheat	cytosol	52.02	38.67
EES11610	Sorghum	cytosol	52.91	38.56
Zm00001d001933_P001	Maize	nucleus	52.91	38.44
TraesCS7A01G402300.1	Wheat	cytosol	51.57	38.33
TraesCS7D01G396100.2	Wheat	cytosol	51.57	38.33
Zm00001d036796_P004	Maize	extracellular	51.57	38.21
TraesCS6A01G166900.1	Wheat	cytosol	52.02	38.16
KXG20371	Sorghum	cytosol	52.47	38.11
TraesCS6D01G155400.1	Wheat	cytosol	51.57	37.83
HORVU6Hr1G025870.1	Barley	cytosol	31.84	37.37
TraesCS6D01G155300.1	Wheat	mitochondrion	50.22	36.6
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	31.84	36.41
Zm00001d046740_P001	Maize	plastid	51.12	33.53
HORVU6Hr1G033840.5	Barley	mitochondrion	50.67	33.14
Zm00001d032312_P001	Maize	cytosol	21.97	33.11
TraesCS6D01G155200.1	Wheat	cytosol	30.49	32.54
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	49.33	30.73
TraesCS6A01G166800.1	Wheat	cytosol	31.39	22.58
TraesCS6A01G166700.1	Wheat	cytosol	30.04	21.27
Solyc01g014860.2.1	Tomato	nucleus	0.0	0.0

Protein Annotations

MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	UniProt:M1C836	PFAM:PF00013	PFAM:PF00642	EnsemblPlantsGene:PGSC0003DMG400024054	PGSC:PGSC0003DMG400024054
EnsemblPlants:PGSC0003DMT400061829	PFscan:PS50084	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF154	SMART:SM00322
SMART:SM00356	SUPFAM:SSF54791	SUPFAM:SSF90229	UniParc:UPI000294A7A3	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf
SEG:seg	:	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024054]

Coordinates

chr1:-:55172097..55173228

Molecular Weight (calculated)

23794.1 Da

IEP (calculated)

8.913

GRAVY (calculated)

-0.480

Length

223 amino acids

Sequence
(BLAST)

001: MLGSNPALPA APRNSIAPPS FPDGSSSLAV KTRLCTKFNT AEGCKFGDKC RFAHGDWELG RPAAPLHEES HGMFQMHGRY GSRPETNPTG LGAAASFGSS
101: ATAKISVDAS LAGRIIGKGG VNSKQICRMT GAKFSIRDHE SDPNLRNIEL EGTIDQIEQA SRMVRELIQS VTTSAGPPMK NTSSSVTSNY KTKICENFTK
201: SSCTFGEKCH FAHGAEELRK SGL

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.