Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | KXG37841 | AT5G04280.1 | 21798944 |
| AT5G06770.1 | OQU88590 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d001933_P001 | Maize | nucleus | 86.93 | 86.64 |
| Os04t0665700-01 | Rice | nucleus | 81.37 | 80.58 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 74.51 | 74.51 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 73.2 | 73.68 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 72.22 | 71.99 |
| CDY01104 | Canola | cytosol | 46.41 | 59.17 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 58.5 | 58.88 |
| CDY47892 | Canola | cytosol | 43.79 | 58.26 |
| CDY08453 | Canola | cytosol | 46.41 | 58.2 |
| Bra034776.1-P | Field mustard | cytosol | 46.41 | 58.2 |
| EES04688 | Sorghum | nucleus | 55.88 | 57.97 |
| KRH67057 | Soybean | nucleus | 55.88 | 57.97 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 56.54 | 57.86 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 55.88 | 57.77 |
| CDY00756 | Canola | cytosol | 44.44 | 57.63 |
| KRH67059 | Soybean | cytosol, nucleus | 55.56 | 57.63 |
| CDX73836 | Canola | cytosol | 44.12 | 57.45 |
| KRG95373 | Soybean | cytosol | 55.23 | 57.29 |
| KRH71867 | Soybean | nucleus | 55.23 | 57.29 |
| AT5G06770.1 | Thale cress | cytosol | 44.77 | 57.08 |
| Bra001436.1-P | Field mustard | cytosol | 43.79 | 57.02 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 54.9 | 55.81 |
| KXG20371 | Sorghum | cytosol | 55.88 | 55.7 |
| AT3G12130.1 | Thale cress | cytosol | 44.77 | 55.24 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 53.59 | 55.22 |
| KRG93085 | Soybean | cytosol | 52.61 | 54.21 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 24.18 | 54.01 |
| Solyc01g014850.2.1 | Tomato | nucleus | 43.79 | 53.6 |
| Solyc10g078750.1.1 | Tomato | nucleus | 51.31 | 53.58 |
| KRH36330 | Soybean | nucleus | 51.96 | 53.54 |
| PGSC0003DMT400029683 | Potato | cytosol | 52.29 | 53.16 |
| PGSC0003DMT400061829 | Potato | plastid | 38.56 | 52.91 |
| PGSC0003DMT400025445 | Potato | cytosol | 49.02 | 52.82 |
| Solyc10g080480.1.1 | Tomato | nucleus | 48.69 | 51.56 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 41.18 | 51.43 |
| PGSC0003DMT400060957 | Potato | cytosol | 49.35 | 51.36 |
| CDY72512 | Canola | nucleus | 32.68 | 48.31 |
| Solyc01g014860.2.1 | Tomato | nucleus | 7.52 | 46.94 |
| PGSC0003DMT400016195 | Potato | cytosol | 44.12 | 46.71 |
| Solyc01g073940.2.1 | Tomato | nucleus | 43.79 | 46.37 |
| Solyc03g063200.2.1 | Tomato | nucleus | 23.86 | 44.79 |
| CDY05002 | Canola | cytosol | 22.22 | 43.59 |
| Bra028719.1-P | Field mustard | cytosol | 22.22 | 43.59 |
| Zm00001d032312_P001 | Maize | cytosol | 19.93 | 41.22 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | EntrezGene:8070284 | UniProt:C5Y9Z9 | EnsemblPlants:EES11610 |
| ProteinID:EES11610 | ProteinID:EES11610.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf |
| PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF156 | SMART:SM00322 | SMART:SM00356 | EnsemblPlantsGene:SORBI_3006G256500 | SUPFAM:SSF54791 | SUPFAM:SSF90229 |
| unigene:Sbi.20604 | UniParc:UPI0001A87279 | RefSeq:XP_002447282.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr6:+:59322095..59325398
Molecular Weight (calculated)
31943.7 Da
IEP (calculated)
9.960
GRAVY (calculated)
-0.545
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAGAARKR SRPESANGYA AGGKRSKDTE SFQTGQSSKS KPCTKFFSTI GCPFGEGCHF LHFVPGGYPA VAKMLNLGSP AVSAPSRTHV DHAALTGASH
101: QASMGKTRMC TKYNTTEGCK FGDKCHFAHS ERELGKPAYM SHEGPPMGGR YGGRPEPLQQ ASMGPPAGNF GASATAKISV DASLAGGIIG KGGVNTKQIS
201: RVTGVKLSIR DHESNPSQKN IELEGNFDQI KQASDMVRDL IATISASMPA KNLSASAAPA GGRGGGLGGR SNYKTKLCEN FVKGACTFGD RCHFAHGETE
301: QRRGAA
101: QASMGKTRMC TKYNTTEGCK FGDKCHFAHS ERELGKPAYM SHEGPPMGGR YGGRPEPLQQ ASMGPPAGNF GASATAKISV DASLAGGIIG KGGVNTKQIS
201: RVTGVKLSIR DHESNPSQKN IELEGNFDQI KQASDMVRDL IATISASMPA KNLSASAAPA GGRGGGLGGR SNYKTKLCEN FVKGACTFGD RCHFAHGETE
301: QRRGAA
001: MDARKRGRPE AAASHNSNGG FKRSKQEMES ISTGLGSKSK PCTKFFSTSG CPFGDNCHFL HYVPGGYNAA AQMTNLRPPV SQVSRNMQGS GGPGGRFSGR
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
101: GDPGSGPVSI FGASTSKISV DASLAGAIIG KGGIHSKQIC RETGAKLSIK DHERDPNLKI IELEGTFEQI NVASGMVREL IGRLGSVKKP QGIGGPEGKP
201: HPGSNYKTKI CDRYSKGNCT YGDRCHFAHG ESELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.