Factsheet for Solyc03g063200.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g071560.2.1
Solyc11g008210.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Solyc03g071560.2.1	AT5G04280.1	21798944
AT5G06770.1	Solyc11g008210.1.1	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g014860.2.1	Tomato	nucleus	15.95	53.06
PGSC0003DMT400025445	Potato	cytosol	79.14	45.42
KRH67059	Soybean	cytosol, nucleus	60.12	33.22
KRH67057	Soybean	nucleus	58.9	32.54
KRG95373	Soybean	cytosol	58.9	32.54
VIT_08s0007g06400.t01	Wine grape	cytosol	58.28	31.99
Solyc10g078750.1.1	Tomato	nucleus	57.06	31.74
KRH71867	Soybean	nucleus	57.06	31.53
Solyc10g080480.1.1	Tomato	nucleus	54.6	30.8
Zm00001d036796_P004	Maize	extracellular	46.01	24.92
TraesCS6B01G194300.1	Wheat	cytosol	45.4	24.92
CDY47892	Canola	cytosol	34.97	24.78
KXG20371	Sorghum	cytosol	46.63	24.76
CDY00756	Canola	cytosol	35.58	24.58
GSMUA_Achr7P20530_001	Banana	nucleus	44.79	24.41
GSMUA_Achr1P19650_001	Banana	nucleus	45.4	24.34
AT3G12130.1	Thale cress	cytosol	36.81	24.19
CDY01104	Canola	cytosol	35.58	24.17
TraesCS6D01G155400.1	Wheat	cytosol	44.79	24.01
TraesCS6A01G166900.1	Wheat	cytosol	44.79	24.01
TraesCS7A01G402300.1	Wheat	cytosol	44.17	24.0
TraesCS7D01G396100.2	Wheat	cytosol	44.17	24.0
TraesCS7B01G302400.1	Wheat	cytosol	44.17	24.0
Os02t0194200-01	Rice	nucleus	44.17	24.0
EES11610	Sorghum	cytosol	44.79	23.86
CDX73836	Canola	cytosol	34.36	23.83
CDY08453	Canola	cytosol	35.58	23.77
Bra034776.1-P	Field mustard	cytosol	35.58	23.77
Zm00001d001933_P001	Maize	nucleus	44.17	23.45
EES04688	Sorghum	nucleus	42.33	23.39
VIT_11s0016g04280.t01	Wine grape	cytosol	19.63	23.36
AT5G06770.1	Thale cress	cytosol	34.36	23.33
Solyc01g073940.2.1	Tomato	nucleus	41.1	23.18
TraesCS2D01G488300.1	Wheat	nucleus, plastid	42.94	23.03
Bra001436.1-P	Field mustard	cytosol	33.13	22.98
Os04t0665700-01	Rice	nucleus	43.56	22.98
TraesCS6A01G166800.1	Wheat	cytosol	43.56	22.9
TraesCS2A01G488000.1	Wheat	nucleus, plastid	42.94	22.88
TraesCS2B01G515600.1	Wheat	nucleus, plastid	42.94	22.8
CDY72512	Canola	nucleus	28.22	22.22
HORVU6Hr1G033840.5	Barley	mitochondrion	44.79	21.41
Os06t0618100-01	Rice	nucleus	32.52	20.46
Solyc01g014850.2.1	Tomato	nucleus	30.67	20.0
TraesCS6D01G155300.1	Wheat	mitochondrion	36.81	19.61
TraesCS6B01G194200.1	Wheat	cytosol, mitochondrion, plastid	23.31	19.49
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	28.22	18.78
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	40.49	18.44
Zm00001d046740_P001	Maize	plastid	36.81	17.65
TraesCS6D01G155200.1	Wheat	cytosol	17.18	13.4
TraesCS6A01G166700.1	Wheat	cytosol	24.54	12.7
CDY05002	Canola	cytosol	9.2	9.62
Bra028719.1-P	Field mustard	cytosol	9.2	9.62
HORVU6Hr1G025870.1	Barley	cytosol	7.98	6.84
Zm00001d032312_P001	Maize	cytosol	2.45	2.7

Protein Annotations

MapMan:15.5.16	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000571
UniProt:K4BH68	PFAM:PF00642	PFAM:PF14608	PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF154
SMART:SM00356	SUPFAM:SSF90229	EnsemblPlantsGene:Solyc03g063200.2	EnsemblPlants:Solyc03g063200.2.1	UniParc:UPI000276763D	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:-:33515484..33519616

Molecular Weight (calculated)

17480.9 Da

IEP (calculated)

10.225

GRAVY (calculated)

-0.483

Length

163 amino acids

Sequence
(BLAST)

001: MEIRKRNRNE SGFNGNAGFK KAKPEMDSLS SGIGSKSKPC TKFFSTVGCS FGENCHFLHY VPGGYNVVAK MMNIAPSPAS PIPSGNTPAV KTKICSKFNT
101: AEGCKFGDKC RFAHGEWEIG KPIVPSPRAM GVGPIPDRFG GRRESPVASF AHLLADRSQT GNP

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.