Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06770.1 | KXG37841 | AT5G04280.1 | 21798944 |
| AT5G06770.1 | OQU88590 | AT5G04280.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d036796_P004 | Maize | extracellular | 91.53 | 93.36 |
| Os06t0618100-01 | Rice | nucleus | 69.06 | 81.85 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 78.18 | 80.0 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 77.85 | 79.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 77.85 | 79.67 |
| Zm00001d046740_P001 | Maize | plastid | 79.8 | 72.06 |
| EES04688 | Sorghum | nucleus | 65.47 | 68.14 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 59.61 | 61.2 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 37.78 | 61.05 |
| CDY01104 | Canola | cytosol | 47.23 | 60.42 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 58.96 | 60.13 |
| CDY47892 | Canola | cytosol | 44.63 | 59.57 |
| CDY08453 | Canola | cytosol | 46.91 | 59.02 |
| Bra034776.1-P | Field mustard | cytosol | 46.91 | 59.02 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 56.68 | 58.78 |
| CDX73836 | Canola | cytosol | 44.63 | 58.3 |
| Bra001436.1-P | Field mustard | cytosol | 44.63 | 58.3 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 57.65 | 58.22 |
| KRG95373 | Soybean | cytosol | 55.7 | 57.97 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 56.03 | 57.91 |
| CDY00756 | Canola | cytosol | 44.3 | 57.63 |
| KRH67057 | Soybean | nucleus | 55.37 | 57.63 |
| KRG93085 | Soybean | cytosol | 55.7 | 57.58 |
| AT5G06770.1 | Thale cress | cytosol | 44.95 | 57.5 |
| KRH67059 | Soybean | cytosol, nucleus | 55.05 | 57.29 |
| KRH36330 | Soybean | nucleus | 55.37 | 57.24 |
| PGSC0003DMT400060957 | Potato | cytosol | 54.4 | 56.8 |
| KRH71867 | Soybean | nucleus | 54.4 | 56.61 |
| AT3G12130.1 | Thale cress | cytosol | 45.6 | 56.45 |
| Solyc10g080480.1.1 | Tomato | nucleus | 53.09 | 56.4 |
| PGSC0003DMT400025445 | Potato | cytosol | 51.79 | 55.99 |
| EES11610 | Sorghum | cytosol | 55.7 | 55.88 |
| PGSC0003DMT400029683 | Potato | cytosol | 54.72 | 55.81 |
| Solyc10g078750.1.1 | Tomato | nucleus | 53.09 | 55.63 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 43.0 | 53.88 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 23.78 | 53.28 |
| Solyc01g014850.2.1 | Tomato | nucleus | 43.0 | 52.8 |
| PGSC0003DMT400061829 | Potato | plastid | 38.11 | 52.47 |
| PGSC0003DMT400016195 | Potato | cytosol | 47.23 | 50.17 |
| Solyc01g073940.2.1 | Tomato | nucleus | 46.25 | 49.13 |
| Solyc03g063200.2.1 | Tomato | nucleus | 24.76 | 46.63 |
| CDY72512 | Canola | nucleus | 28.99 | 43.0 |
| CDY05002 | Canola | cytosol | 21.5 | 42.31 |
| Bra028719.1-P | Field mustard | cytosol | 21.5 | 42.31 |
| Solyc01g014860.2.1 | Tomato | nucleus | 6.51 | 40.82 |
Protein Annotations
| MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | UniProt:A0A194YL98 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | EnsemblPlants:KXG20371 | ProteinID:KXG20371 | ProteinID:KXG20371.1 | PFAM:PF00013 |
| PFAM:PF00642 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 | PANTHER:PTHR10288:SF147 | SMART:SM00322 |
| SMART:SM00356 | EnsemblPlantsGene:SORBI_3010G193800 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI0001C80630 | InterPro:Znf_CCCH |
| InterPro:Znf_CCCH_sf | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:-:53616933..53619867
Molecular Weight (calculated)
31710.8 Da
IEP (calculated)
10.029
GRAVY (calculated)
-0.582
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGRKRTAP EAGANGAGGP KRARESETTQ MGVGSKSKPC TKFFSTAGCP FGASCHFLHN FPGGYQAVSK MTNLGGPPVP APPGRMPMGP GGPDGPPSPA
101: VKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPLQMDNSM GAPPPMGPGP NGHFMPPPMP HLDMVPPSTF GASATAKISV DASLAGAIIG KGGANTKHIS
201: RVTGAKLAIR DNEADPNHKN IELEGTFDQI KHASAMVTEL IVRISGKAPG PQAKNNPGGR GPGSHAGGPG SNFKTKLCEN FNKGSCTFGD RCHFAHGESE
301: LRKPAAA
101: VKTRMCNKYN TAEGCKWGSK CHFAHGEREL GKPLQMDNSM GAPPPMGPGP NGHFMPPPMP HLDMVPPSTF GASATAKISV DASLAGAIIG KGGANTKHIS
201: RVTGAKLAIR DNEADPNHKN IELEGTFDQI KHASAMVTEL IVRISGKAPG PQAKNNPGGR GPGSHAGGPG SNFKTKLCEN FNKGSCTFGD RCHFAHGESE
301: LRKPAAA
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.