Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- mitochondrion 2
- plastid 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g073940.2.1 | Tomato | nucleus | 93.77 | 93.77 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 57.44 | 56.08 |
| PGSC0003DMT400061829 | Potato | plastid | 39.1 | 50.67 |
| PGSC0003DMT400025445 | Potato | cytosol | 49.48 | 50.35 |
| Os02t0194200-01 | Rice | nucleus | 52.25 | 50.33 |
| PGSC0003DMT400060957 | Potato | cytosol | 50.87 | 50.0 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 51.21 | 49.5 |
| Zm00001d036796_P004 | Maize | extracellular | 51.21 | 49.17 |
| PGSC0003DMT400029683 | Potato | cytosol | 50.87 | 48.84 |
| TraesCS6B01G194300.1 | Wheat | cytosol | 49.83 | 48.48 |
| EES04688 | Sorghum | nucleus | 49.48 | 48.47 |
| Os06t0618100-01 | Rice | nucleus | 42.91 | 47.88 |
| Os04t0665700-01 | Rice | nucleus | 50.87 | 47.57 |
| TraesCS6D01G155400.1 | Wheat | cytosol | 49.83 | 47.37 |
| TraesCS6A01G166900.1 | Wheat | cytosol | 49.83 | 47.37 |
| KXG20371 | Sorghum | cytosol | 50.17 | 47.23 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 49.13 | 46.71 |
| TraesCS7D01G396100.2 | Wheat | cytosol | 48.44 | 46.67 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 48.1 | 46.33 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 47.75 | 46.0 |
| EES11610 | Sorghum | cytosol | 46.71 | 44.12 |
| TraesCS2D01G488300.1 | Wheat | nucleus, plastid | 46.37 | 44.08 |
| TraesCS2A01G488000.1 | Wheat | nucleus, plastid | 46.37 | 43.79 |
| TraesCS2B01G515600.1 | Wheat | nucleus, plastid | 46.37 | 43.65 |
| Zm00001d001933_P001 | Maize | nucleus | 46.37 | 43.65 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 50.52 | 42.82 |
| TraesCS6D01G155300.1 | Wheat | mitochondrion | 43.6 | 41.18 |
| TraesCS6B01G194200.1 | Wheat | cytosol, mitochondrion, plastid | 26.3 | 38.97 |
| Zm00001d046740_P001 | Maize | plastid | 45.33 | 38.53 |
| Zm00001d053682_P001 | Maize | cytosol, mitochondrion, nucleus | 47.4 | 38.27 |
| TraesCS6D01G155200.1 | Wheat | cytosol | 26.99 | 37.32 |
| HORVU6Hr1G025870.1 | Barley | cytosol | 24.22 | 36.84 |
| TraesCS6A01G166800.1 | Wheat | cytosol | 37.72 | 35.16 |
| TraesCS6A01G166700.1 | Wheat | cytosol | 31.83 | 29.21 |
| Zm00001d032312_P001 | Maize | cytosol | 14.19 | 27.7 |
Protein Annotations
| EntrezGene:102600080 | MapMan:15.5.16 | Gene3D:3.30.1370.10 | Gene3D:4.10.1000.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 | InterPro:IPR036612 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | UniProt:M1A793 | PFAM:PF00013 | PFAM:PF00642 | PFAM:PF14608 |
| EnsemblPlantsGene:PGSC0003DMG400006330 | PGSC:PGSC0003DMG400006330 | EnsemblPlants:PGSC0003DMT400016195 | PFscan:PS50084 | PFscan:PS50103 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF154 | SMART:SM00322 | SMART:SM00356 | SUPFAM:SSF54791 | SUPFAM:SSF90229 | UniParc:UPI000296735F |
| RefSeq:XP_006359166.1 | InterPro:Znf_CCCH | InterPro:Znf_CCCH_sf | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006330]
Coordinates
chr1:+:66662740..66666762
Molecular Weight (calculated)
30658.3 Da
IEP (calculated)
9.627
GRAVY (calculated)
-0.438
Length
289 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFGRKRRVG GAFGSSGGMK KSRDESESFT TGVGSKSKPC MKFYSTSGCS FGAGCHFLHY VPGYTAMSQL SNMGSNPAPP FGRNSASFSD GPGPAVKSKF
101: CSKFNTAEGC RFGDKCHFAH GEMEIGKQVR PAYDDFQAKG PPSGFSGYLE PSQPGLAATN FGASATTTIS IDASLAGNII GKSGVNSKHI CRVTGVKLFI
201: KEHETDTNKR NVELQGTFDQ INQASAMVRE LISNISTPTG GLKKAAPFTR DPPGPLKTKM CANFSKGLCT FGEKCHFAHG ASELQKPLT
101: CSKFNTAEGC RFGDKCHFAH GEMEIGKQVR PAYDDFQAKG PPSGFSGYLE PSQPGLAATN FGASATTTIS IDASLAGNII GKSGVNSKHI CRVTGVKLFI
201: KEHETDTNKR NVELQGTFDQ INQASAMVRE LISNISTPTG GLKKAAPFTR DPPGPLKTKM CANFSKGLCT FGEKCHFAHG ASELQKPLT
001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.