Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G396100.2 | Wheat | cytosol | 70.0 | 44.33 |
| TraesCS7B01G302400.1 | Wheat | cytosol | 70.0 | 44.33 |
| TraesCS7A01G402300.1 | Wheat | cytosol | 69.47 | 44.0 |
| Os06t0618100-01 | Rice | nucleus | 57.37 | 42.08 |
| VIT_11s0016g04280.t01 | Wine grape | cytosol | 28.95 | 40.15 |
| Zm00001d036796_P004 | Maize | extracellular | 62.11 | 39.2 |
| KXG20371 | Sorghum | cytosol | 61.05 | 37.78 |
| Zm00001d046740_P001 | Maize | plastid | 60.53 | 33.82 |
| Bra001436.1-P | Field mustard | cytosol | 40.53 | 32.77 |
| CDY47892 | Canola | cytosol | 38.95 | 32.17 |
| PGSC0003DMT400061829 | Potato | plastid | 37.37 | 31.84 |
| CDX73836 | Canola | cytosol | 38.95 | 31.49 |
| CDY00756 | Canola | cytosol | 38.42 | 30.93 |
| CDY01104 | Canola | cytosol | 38.42 | 30.42 |
| Solyc01g014850.2.1 | Tomato | nucleus | 40.0 | 30.4 |
| Bra038697.1-P | Field mustard | cytosol, mitochondrion, nucleus | 38.95 | 30.2 |
| AT5G06770.1 | Thale cress | cytosol | 37.89 | 30.0 |
| Bra034776.1-P | Field mustard | cytosol | 38.42 | 29.92 |
| CDY08453 | Canola | cytosol | 38.42 | 29.92 |
| KRG95373 | Soybean | cytosol | 43.68 | 28.14 |
| GSMUA_Achr1P19650_001 | Banana | nucleus | 44.74 | 27.96 |
| HORVU6Hr1G033840.5 | Barley | mitochondrion | 50.0 | 27.86 |
| GSMUA_Achr7P20530_001 | Banana | nucleus | 43.68 | 27.76 |
| VIT_08s0007g06400.t01 | Wine grape | cytosol | 43.16 | 27.61 |
| AT3G12130.1 | Thale cress | cytosol | 35.79 | 27.42 |
| KRH67057 | Soybean | nucleus | 42.11 | 27.12 |
| KRH67059 | Soybean | cytosol, nucleus | 42.11 | 27.12 |
| VIT_13s0156g00320.t01 | Wine grape | cytosol | 42.11 | 27.03 |
| Solyc10g078750.1.1 | Tomato | nucleus | 41.05 | 26.62 |
| VIT_06s0004g01290.t01 | Wine grape | cytosol | 42.11 | 26.58 |
| PGSC0003DMT400029683 | Potato | cytosol | 42.11 | 26.58 |
| PGSC0003DMT400060957 | Potato | cytosol | 41.05 | 26.53 |
| Solyc10g080480.1.1 | Tomato | nucleus | 40.0 | 26.3 |
| KRH36330 | Soybean | nucleus | 41.05 | 26.26 |
| KRH71867 | Soybean | nucleus | 40.53 | 26.1 |
| KRG93085 | Soybean | cytosol | 40.53 | 25.93 |
| PGSC0003DMT400025445 | Potato | cytosol | 37.89 | 25.35 |
| Bra028719.1-P | Field mustard | cytosol | 20.0 | 24.36 |
| CDY05002 | Canola | cytosol | 20.0 | 24.36 |
| PGSC0003DMT400016195 | Potato | cytosol | 36.84 | 24.22 |
| Solyc01g073940.2.1 | Tomato | nucleus | 36.32 | 23.88 |
| CDY72512 | Canola | nucleus | 22.11 | 20.29 |
| Solyc03g063200.2.1 | Tomato | nucleus | 6.84 | 7.98 |
| Solyc01g014860.2.1 | Tomato | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G025870.1 | EnsemblPlantsGene:HORVU6Hr1G025870 | Gene3D:3.30.1370.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF147 | PFAM:PF00013 | PFscan:PS50084 | SEG:seg | SMART:SM00322 | SUPFAM:SSF54791 |
| UniParc:UPI000B474C8D | UniProt:A0A287TMN3 | MapMan:15.5.16 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:95806777..95807779
Molecular Weight (calculated)
19561.2 Da
IEP (calculated)
6.771
GRAVY (calculated)
-0.411
Length
190 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEPGFDAT GAPCNPDHDK LELPRGESIS MLLNNSMAPP MGPRPNGHFQ PPPMPGPDMV PPSTFGASAT TKISVDASLA GAIIGKGGVN TKHISRMTGA
101: KLAIRDNEAD PNHKSIELEG SFDQVNHASA MVKELILRIG GNAPPQAKNA GRGPAGGGGS NFKTKHDQCR AAVCWCGCGA DAAAAQTECP
101: KLAIRDNEAD PNHKSIELEG SFDQVNHASA MVKELILRIG GNAPPQAKNA GRGPAGGGGS NFKTKHDQCR AAVCWCGCGA DAAAAQTECP
001: MTNLRPPVSQ VSRNMQGSGG PGGRFSGRGD PGSGPVSIFG ASTSKISVDA SLAGAIIGKG GIHSKQICRE TGAKLSIKDH ERDPNLKIIE LEGTFEQINV
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA
101: ASGMVRELIG RLGSVKKPQG IGGPEGKPHP GSNYKTKICD RYSKGNCTYG DRCHFAHGES ELRRSGIA
Arabidopsis Description
Zinc finger CCCH domain-containing protein 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9FG30]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.