Factsheet for Zm00001d036796_P004

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d033511_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06770.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G06770.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G06770.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G06770.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20371	Sorghum	cytosol	93.36	91.53
Os06t0618100-01	Rice	nucleus	70.43	81.85
TraesCS7D01G396100.2	Wheat	cytosol	81.4	81.67
TraesCS7A01G402300.1	Wheat	cytosol	80.73	81.0
TraesCS7B01G302400.1	Wheat	cytosol	80.73	81.0
Zm00001d046740_P001	Maize	plastid	82.72	73.24
HORVU6Hr1G025870.1	Barley	cytosol	39.2	62.11
GSMUA_Achr7P20530_001	Banana	nucleus	60.8	61.2
CDY47892	Canola	cytosol	45.85	60.0
VIT_08s0007g06400.t01	Wine grape	cytosol	59.14	59.93
VIT_06s0004g01290.t01	Wine grape	cytosol	59.8	59.8
VIT_13s0156g00320.t01	Wine grape	cytosol	58.14	59.12
GSMUA_Achr1P19650_001	Banana	nucleus	59.47	58.88
CDY01104	Canola	cytosol	46.84	58.75
Bra001436.1-P	Field mustard	cytosol	45.85	58.72
KRG95373	Soybean	cytosol	57.48	58.64
CDX73836	Canola	cytosol	45.51	58.3
KRH67057	Soybean	nucleus	56.81	57.97
CDY08453	Canola	cytosol	46.84	57.79
Bra034776.1-P	Field mustard	cytosol	46.84	57.79
CDY00756	Canola	cytosol	45.18	57.63
KRH67059	Soybean	cytosol, nucleus	56.48	57.63
KRG93085	Soybean	cytosol	56.81	57.58
KRH36330	Soybean	nucleus	56.81	57.58
KRH71867	Soybean	nucleus	56.15	57.29
Zm00001d001933_P001	Maize	nucleus	58.14	57.0
AT5G06770.1	Thale cress	cytosol	44.85	56.25
AT3G12130.1	Thale cress	cytosol	45.85	55.65
PGSC0003DMT400060957	Potato	cytosol	53.82	55.1
PGSC0003DMT400029683	Potato	cytosol	54.82	54.82
Solyc10g080480.1.1	Tomato	nucleus	52.49	54.67
Solyc10g078750.1.1	Tomato	nucleus	53.16	54.61
PGSC0003DMT400025445	Potato	cytosol	51.16	54.23
VIT_11s0016g04280.t01	Wine grape	cytosol	24.58	54.01
Bra038697.1-P	Field mustard	cytosol, mitochondrion, nucleus	43.52	53.47
Solyc01g014850.2.1	Tomato	nucleus	43.19	52.0
PGSC0003DMT400061829	Potato	plastid	38.21	51.57
PGSC0003DMT400016195	Potato	cytosol	49.17	51.21
Solyc01g073940.2.1	Tomato	nucleus	48.17	50.17
Zm00001d053682_P001	Maize	cytosol, mitochondrion, nucleus	59.47	50.0
Solyc03g063200.2.1	Tomato	nucleus	24.92	46.01
Solyc01g014860.2.1	Tomato	nucleus	7.31	44.9
CDY72512	Canola	nucleus	29.9	43.48
CDY05002	Canola	cytosol	21.59	41.67
Bra028719.1-P	Field mustard	cytosol	21.59	41.67
Zm00001d032312_P001	Maize	cytosol	15.28	31.08

Protein Annotations

EntrezGene:100191993	MapMan:15.5.16	Gene3D:3.30.1370.10	Gene3D:4.10.1000.10	ProteinID:AQK81984.1	UniProt:B4FAX8
EMBL:BT034266	EMBL:BT084833	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR000571	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFAM:PF00642	PFscan:PS50084
PFscan:PS50103	PANTHER:PTHR10288	PANTHER:PTHR10288:SF147	SMART:SM00322	SMART:SM00356	SUPFAM:SSF54791
SUPFAM:SSF90229	UniParc:UPI00017B62DF	EnsemblPlantsGene:Zm00001d036796	EnsemblPlants:Zm00001d036796_P004	EnsemblPlants:Zm00001d036796_T004	InterPro:Znf_CCCH
InterPro:Znf_CCCH_sf	SEG:seg	:	:	:	:

Description

C3H-transcription factor 326Zinc finger CCCH domain-containing protein 52

Coordinates

chr6:+:101178916..101181950

Molecular Weight (calculated)

31255.3 Da

IEP (calculated)

10.029

GRAVY (calculated)

-0.625

Length

301 amino acids

Sequence
(BLAST)

001: MDTGRKRTAP EGANGAGGPK RARESETTGV GSKSKPCTKF FSTAGCPFGA SCHFLHNFPG GYQAVSKMTN LGGPPVPAPP GRMPMGPGGP DGPPSPAVKT
101: RMCNKYNTAE GCKWGSKCHF AHGERELGKP LQMDNPMGPP PMGPGPNGHF MPPPMPFPDM VPPSTFGASA TAKISVDASL AGAIIGKGGT NTKHISRVTG
201: AKLAIRDNEA DPNHKNIELE GTFDQIKHAS AMVTELIVRI SGKPPPQAKN NPGRGPGSHA GGPGSNFKTK LCENFNKGSC TFGDRCHFAH GEGELRKPAA
301: A

Best Arabidopsis Sequence Match ( AT3G12130.1 )
(BLAST)

001: MDTRKRGRPE AGSFNSNGGG YKKSKQEMES YSTGLGSKSK PCTKFFSTSG CPFGENCHFL HYVPGGYNAV SQMTNMGPPI PQVSRNMQGS GNGGRFSGRG
101: ESGPGHVSNF GDSATARFSV DASLAGAIIG KGGVSSKQIC RQTGVKLSIQ DHERDPNLKN IVLEGTLEQI SEASAMVKDL IGRLNSAAKK PPGGGLGGGG
201: GMGSEGKPHP GSNFKTKICE RFSKGNCTFG DRCHFAHGEA ELRKSGIV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7C3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.