Factsheet for Zm00001d007799_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22065420
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007799_P001
Zm00001d013543_P009
Zm00001d019041_P001
Zm00001d030739_P002
Zm00001d033511_P002
Zm00001d048609_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	Zm00001d030739_P002	AT3G55460.1	21798944
AT5G04280.1	Zm00001d048609_P001	AT3G55460.1	21798944
AT5G04280.1	Zm00001d007799_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d013543_P009	AT5G04280.1	21798944
AT5G04280.1	Zm00001d019041_P001	AT5G04280.1	21798944
AT5G04280.1	Zm00001d033511_P002	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU88590	Sorghum	nucleus	71.09	90.7
Zm00001d019041_P001	Maize	extracellular, plasma membrane	67.97	89.08
TraesCS2D01G238900.1	Wheat	nucleus	57.29	75.09
TraesCS2B01G259400.1	Wheat	nucleus	56.77	74.4
TraesCS2A01G237400.1	Wheat	nucleus	56.77	74.4
GSMUA_Achr4P22370_001	Banana	nucleus	48.44	59.81
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	44.79	57.91
GSMUA_Achr2P12550_001	Banana	nucleus	31.77	54.46
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	44.01	54.34
VIT_13s0019g05080.t01	Wine grape	nucleus	38.28	52.88
KRG90774	Soybean	nucleus	36.98	50.9
PGSC0003DMT400043581	Potato	nucleus	35.16	49.82
Zm00001d013568_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid	19.01	45.91
Zm00001d041246_P001	Maize	nucleus	17.19	45.52
Zm00001d031168_P001	Maize	plastid	18.23	45.16
VIT_08s0007g04870.t01	Wine grape	cytosol	29.17	45.16
KRH35987	Soybean	nucleus	33.59	44.64
CDY11283	Canola	nucleus	35.42	44.44
Bra005798.1-P	Field mustard	nucleus	35.42	44.44
Zm00001d034768_P005	Maize	nucleus	23.44	43.9
AT1G60650.2	Thale cress	nucleus	33.33	43.84
Solyc03g071560.2.1	Tomato	nucleus	35.42	43.31
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	34.9	43.23
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	38.8	43.19
CDX80910	Canola	nucleus	28.91	42.53
PGSC0003DMT400079815	Potato	nucleus	34.11	41.2
CDY34132	Canola	nucleus	27.34	41.18
Solyc11g008210.1.1	Tomato	nucleus	30.73	40.0
Zm00001d012052_P001	Maize	mitochondrion, plastid	14.06	34.62
Zm00001d041949_P001	Maize	mitochondrion	7.81	27.78
Zm00001d041750_P001	Maize	mitochondrion	17.97	26.44
Zm00001d024675_P001	Maize	mitochondrion	9.64	26.43
Zm00001d006566_P002	Maize	mitochondrion	7.55	25.22
Zm00001d023734_P003	Maize	nucleus, plastid	18.23	24.39
Zm00001d022065_P001	Maize	mitochondrion	18.75	23.38
Zm00001d028661_P001	Maize	plastid	9.64	22.29
Zm00001d026016_P002	Maize	plastid	8.33	21.33
Zm00001d017930_P003	Maize	plastid	7.81	7.3

Protein Annotations

MapMan:35.1	Gene3D:4.10.60.10	UniProt:A0A1D6F8W7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	ProteinID:ONM27601.1	PFAM:PF00076
PFAM:PF00098	PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI000845643E
EnsemblPlantsGene:Zm00001d007799	EnsemblPlants:Zm00001d007799_P001	EnsemblPlants:Zm00001d007799_T001	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

Glycine-rich RNA-binding protein 7

Coordinates

chr2:-:239865768..239869056

Molecular Weight (calculated)

42055.3 Da

IEP (calculated)

9.501

GRAVY (calculated)

-0.858

Length

384 amino acids

Sequence
(BLAST)

001: MAEDKVRRIF VGGLSWKTTE RTLERTFGQY GNVIEAQDYT LKIIICVRYG ERRRFNGFLT VVAWSCNFNL TATADSERLQ SLPFLYVRIL TKLQEKKFTN
101: QLSSLVVVKR ETGRSRGFGF VTFSEPRAVD AAIRGMHNAE LDGRNISVNK AHPRIADDDY GYGGGGGGGY SSGARGGYRS GGDVVPAVSD ECFKCGHSGH
201: DVVPAVSDEC FKCGRSGHWA RECPYSDGSG RTGRYSPASR YGGGAGGRGD RVGGSDRFAR YDDDRYDGGR SVDSRDTYYG AGRDRYARDR HLPATDHHSG
301: DRYSGADRYT SSGFAIERSY ERDGGRSTGT YYRDDPRGTG GYGRGGSRGG GGGPARFGGS YRDRPAPYDR PSRGGAARAY DDRY

Best Arabidopsis Sequence Match ( AT5G04280.1 )
(BLAST)

001: MAAKEGSRIF VGGLSPEVTD RDLERAFSRF GDILDCQIML ERDTGRSRGF GFITFADRRA MDESIREMHG RDFGDRVISV NRAEPKLGRD DGESHGSRGG
101: RDSGYSIAGK GSFGGGGGGG GRVGEDECFK CGRVGHWARD CPSAGGGRGG PVGGFSSRAS AYGGSDGRVD RYADRDRYVD RERYIDDRYD GAARYGARDR
201: FDSREAYIPR DRYASDRYAA PADRFAGGDR YSRGSDRYPP GSYDKARSFE RDIAPSAGSD RYGGGRAGGP IRGGGEEGRG FRSRAGAPYE RPSRSGGGGA
301: YPSSSTFDRY

Arabidopsis Description

RZ1CGlycine-rich RNA-binding protein RZ1C [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN5]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.