Factsheet for PGSC0003DMT400079815

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400043581
PGSC0003DMT400079815

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G04280.1	PGSC0003DMT400043581	AT5G04280.1	21798944
AT5G04280.1	PGSC0003DMT400079815	AT5G04280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008210.1.1	Tomato	nucleus	81.76	88.14
PGSC0003DMT400043581	Potato	nucleus	64.15	75.28
VIT_13s0019g05080.t01	Wine grape	nucleus	58.18	66.55
KRG90774	Soybean	nucleus	57.23	65.23
GSMUA_Achr2P12550_001	Banana	nucleus	39.62	56.25
KRH35987	Soybean	nucleus	50.94	56.06
GSMUA_Achr4P22370_001	Banana	nucleus	50.63	51.77
Bra005798.1-P	Field mustard	nucleus	48.74	50.65
CDY11283	Canola	nucleus	48.74	50.65
AT5G04280.1	Thale cress	cytosol, nucleus, plastid	48.43	49.68
CDX80910	Canola	nucleus	39.94	48.66
TraesCS2D01G238900.1	Wheat	nucleus	44.65	48.46
AT1G60650.2	Thale cress	nucleus	44.03	47.95
Zm00001d033511_P002	Maize	cytosol, mitochondrion, nucleus	44.65	47.81
TraesCS2B01G259400.1	Wheat	nucleus	43.71	47.44
TraesCS2A01G237400.1	Wheat	nucleus	43.71	47.44
KXG37841	Sorghum	nucleus	46.86	47.15
TraesCS4D01G023800.2	Wheat	nucleus	46.54	46.54
Zm00001d013543_P009	Maize	extracellular, mitochondrion, plasma membrane	45.28	46.3
TraesCS4B01G026400.1	Wheat	nucleus	46.23	46.08
TraesCS4A01G288500.1	Wheat	nucleus	45.91	46.06
Os03t0681900-01	Rice	nucleus	44.03	45.45
OQU88590	Sorghum	nucleus	42.77	45.18
CDY34132	Canola	nucleus	36.16	45.1
Zm00001d019041_P001	Maize	extracellular, plasma membrane	40.88	44.37
PGSC0003DMT400084266	Potato	extracellular	21.38	42.24
PGSC0003DMT400076497	Potato	nucleus	26.73	41.46
PGSC0003DMT400083014	Potato	nucleus	21.38	40.96
PGSC0003DMT400084258	Potato	nucleus	21.38	40.96
PGSC0003DMT400084290	Potato	nucleus	21.38	40.96
GSMUA_Achr4P28550_001	Banana	cytosol, mitochondrion, nucleus	43.08	39.71
PGSC0003DMT400001879	Potato	cytosol	21.7	39.2
PGSC0003DMT400045627	Potato	nucleus	25.16	37.38
Zm00001d007799_P001	Maize	mitochondrion, plastid	41.2	34.11
PGSC0003DMT400040748	Potato	mitochondrion	12.89	28.28
PGSC0003DMT400001786	Potato	nucleus	5.66	25.71
PGSC0003DMT400053017	Potato	mitochondrion, plastid	11.64	24.34
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	19.81	23.95
PGSC0003DMT400072597	Potato	mitochondrion	9.43	23.26
PGSC0003DMT400028726	Potato	nucleus	10.06	21.92
PGSC0003DMT400003685	Potato	nucleus	18.55	19.47
PGSC0003DMT400049607	Potato	plastid	9.43	19.11
PGSC0003DMT400064758	Potato	mitochondrion	14.78	18.73
PGSC0003DMT400056141	Potato	mitochondrion	8.18	17.57
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	7.55	16.11
PGSC0003DMT400022733	Potato	plastid	8.18	15.95
PGSC0003DMT400050134	Potato	plastid	8.49	6.75

Protein Annotations

MapMan:16.7.2	Gene3D:3.30.70.330	Gene3D:4.10.60.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	GO:GO:0008270	InterPro:IPR000504	InterPro:IPR001878	InterPro:IPR012677	UniProt:M1D2H4
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00098	EnsemblPlantsGene:PGSC0003DMG400031080	PGSC:PGSC0003DMG400031080	EnsemblPlants:PGSC0003DMT400079815
PFscan:PS50102	PFscan:PS50158	PANTHER:PTHR44993	PANTHER:PTHR44993:SF1	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00343	SMART:SM00360	SUPFAM:SSF54928	SUPFAM:SSF57756	UniParc:UPI00029568BD	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	SEG:seg	:	:	:	:

Description

Glycine-rich RNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031080]

Coordinates

chr11:+:3847547..3852995

Molecular Weight (calculated)

34424.9 Da

IEP (calculated)

9.450

GRAVY (calculated)

-1.345

Length

318 amino acids

Sequence
(BLAST)

001: MSGKDHDYRI FVGGLAWDVT DRQLEGAFGR YGKIIDCQVM LERDTGRPRG FGFLTFADRR SMEDAIREMH GREIGDKVIS VNKAQPKMGG EDSDHGYGGG
101: YGGGGRGSYG GGGRGSYRGS DRGSYGGGDR GSYGGGDRGS YGGGDRGSYG GGGRGSYGGG DRSAGQDNCF KCGRPGHWAR DCQQEGGGRG SRALSPPPRS
201: SDRRYTDDQY DRGHYADKER YDSKDDRYGS RDRFANDRHP AGGDRFADNK YGVSDRYGQN GSGKERGFDR DVGPRDGDRY SSGGPARYEG KSVRDRAGPY
301: DRPRRGGGRP PAAAFDRY

Best Arabidopsis Sequence Match ( AT1G60650.1 )
(BLAST)

001: MKDRENDGNL ESRIFVGGLS WDVTERQLES TFDRYGKITE CQIMVGRDTG RPRGFGFITF TDRRGADDAI KHMHGRELGN KVISVNKAEP KVGGEDVDQL
101: KKGGGYSSRG KGTEDECFKC RRPGHWARDC PSTGDDRERF RVPLAMRSRI GDIDGHRDRY GDRDLERERE REREFDRYMD GRRDRDGGRY SYRDRFDSGD
201: KYEPRDHYPF ERYAPPGDRF VSDRYGMPEH HLENEYRGRE RSYDRDRYAR DTSDRYGDMG PIRDEGRPYR SRPGPYDRPS RPGGRPSSYE RW

Arabidopsis Description

RZ1BGlycine-rich RNA-binding protein RZ1B [Source:UniProtKB/Swiss-Prot;Acc:O22703]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.