Factsheet for PGSC0003DMT400049607

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400023680
PGSC0003DMT400036757
PGSC0003DMT400047665
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	PGSC0003DMT400036757	AT2G33550.1	21798944
AT5G54580.1	PGSC0003DMT400023680	AT3G21215.1	21798944
AT5G54580.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT5G54580.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT5G54580.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT5G54580.1	PGSC0003DMT400069515	AT3G49580.1	21798944
AT5G54580.1	PGSC0003DMT400047665	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063900.2.1	Tomato	plastid	92.99	96.69
VIT_19s0014g04770.t01	Wine grape	mitochondrion	63.06	73.33
Bra002976.1-P	Field mustard	mitochondrion	45.22	68.27
GSMUA_Achr11P...	Banana	mitochondrion	46.5	67.59
KRH55574	Soybean	mitochondrion, plastid	60.51	65.52
KRH25927	Soybean	mitochondrion, plastid	59.24	64.14
CDY42466	Canola	plastid	62.42	64.05
Bra029020.1-P	Field mustard	plastid	61.78	63.4
CDY43035	Canola	plastid	61.78	63.4
CDY64931	Canola	plastid	61.15	62.75
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	45.86	62.61
CDY43820	Canola	plastid	61.78	61.78
GSMUA_Achr8P07380_001	Banana	mitochondrion	52.87	61.48
AT5G54580.1	Thale cress	mitochondrion, plastid	60.51	60.9
EES14515	Sorghum	plastid	52.87	59.29
Zm00001d024675_P001	Maize	mitochondrion	52.23	58.57
Os08t0139000-02	Rice	mitochondrion	52.23	58.16
TraesCS7B01G207500.1	Wheat	mitochondrion	56.05	57.89
TraesCS7A01G307200.1	Wheat	plastid	55.41	56.86
PGSC0003DMT400056141	Potato	mitochondrion	48.41	51.35
PGSC0003DMT400072597	Potato	mitochondrion	29.94	36.43
PGSC0003DMT400028726	Potato	nucleus	33.76	36.3
PGSC0003DMT400040748	Potato	mitochondrion	27.39	29.66
PGSC0003DMT400053017	Potato	mitochondrion, plastid	28.66	29.61
PGSC0003DMT400022733	Potato	plastid	29.94	28.83
PGSC0003DMT400001786	Potato	nucleus	10.83	24.29
PGSC0003DMT400070114	Potato	endoplasmic reticulum, extracellular	21.02	22.15
PGSC0003DMT400084266	Potato	extracellular	22.29	21.74
PGSC0003DMT400001879	Potato	cytosol	23.57	21.02
PGSC0003DMT400083014	Potato	nucleus	21.66	20.48
PGSC0003DMT400084258	Potato	nucleus	21.66	20.48
PGSC0003DMT400084290	Potato	nucleus	21.66	20.48
PGSC0003DMT400076497	Potato	nucleus	25.48	19.51
PGSC0003DMT400072235	Potato	mitochondrion, nucleus	31.21	18.63
PGSC0003DMT400045627	Potato	nucleus	24.84	18.22
PGSC0003DMT400064758	Potato	mitochondrion	28.66	17.93
PGSC0003DMT400043581	Potato	nucleus	23.57	13.65
PGSC0003DMT400003685	Potato	nucleus	26.11	13.53
PGSC0003DMT400050134	Potato	plastid	26.75	10.5
PGSC0003DMT400079815	Potato	nucleus	19.11	9.43

Protein Annotations

EntrezGene:102579159	MapMan:16.12.5.2	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M1BP13	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400019271	PGSC:PGSC0003DMG400019271	EnsemblPlants:PGSC0003DMT400049607	PFscan:PS50102	PANTHER:PTHR45392	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00029633F7	RefSeq:XP_006360109.1	SEG:seg

Description

RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019271]

Coordinates

chr7:+:54039357..54043164

Molecular Weight (calculated)

16796.7 Da

IEP (calculated)

9.907

GRAVY (calculated)

-0.384

Length

157 amino acids

Sequence
(BLAST)

001: MALRAATATA TATATAVAPR GLRALLSTFS SSFPFNTPSK QVEKPPPAEP STNLFVSGLS KRTTSEGLRE AFVKHGEVVH ARVVTDRVSG YSKGFGFVRY
101: ATLEDAEAGI KGMDGQFLDG WVIFAEYARP RPPPPSMQNN NTTPGYGNYN SSSYGSQ

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.