Factsheet for Bra029020.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003085.1-P
Bra005486.1-P
Bra017974.1-P
Bra021860.1-P
Bra022624.1-P
Bra023895.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G54580.1	Bra005486.1-P	AT2G33550.1	21798944
AT5G54580.1	Bra021860.1-P	AT2G33550.1	21798944
AT5G54580.1	Bra023895.1-P	AT3G21215.1	21798944
AT5G54580.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G54580.1	Bra003085.1-P	AT5G53060.1	21798944
AT5G54580.1	Bra022624.1-P	AT5G53060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43035	Canola	plastid	100.0	100.0
CDY43820	Canola	plastid	99.35	96.82
Bra002976.1-P	Field mustard	mitochondrion	62.75	92.31
AT5G54580.1	Thale cress	mitochondrion, plastid	90.2	88.46
KRH55574	Soybean	mitochondrion, plastid	60.78	64.14
KRH25927	Soybean	mitochondrion, plastid	60.13	63.45
Solyc07g063900.2.1	Tomato	plastid	61.44	62.25
PGSC0003DMT400049607	Potato	plastid	63.4	61.78
Zm00001d024675_P001	Maize	mitochondrion	56.21	61.43
EES14515	Sorghum	plastid	56.21	61.43
GSMUA_Achr11P...	Banana	mitochondrion	42.48	60.19
Os08t0139000-02	Rice	mitochondrion	54.9	59.57
GSMUA_Achr8P07380_001	Banana	mitochondrion	51.63	58.52
GSMUA_Achr5P26410_001	Banana	cytosol, mitochondrion, nucleus	43.79	58.26
TraesCS7B01G207500.1	Wheat	mitochondrion	55.56	55.92
TraesCS7A01G307200.1	Wheat	plastid	54.25	54.25
VIT_08s0007g00070.t01	Wine grape	mitochondrion	43.79	50.38
Bra005189.1-P	Field mustard	plastid	39.22	41.67
Bra008100.1-P	Field mustard	cytosol	18.3	34.15
Bra028739.1-P	Field mustard	mitochondrion	31.37	32.88
Bra020279.1-P	Field mustard	mitochondrion	22.88	31.82
Bra037056.1-P	Field mustard	mitochondrion	28.76	29.33
Bra013997.1-P	Field mustard	mitochondrion	27.45	28.97
Bra000516.1-P	Field mustard	mitochondrion	22.22	25.37
Bra025674.1-P	Field mustard	mitochondrion	23.53	24.83
Bra029692.1-P	Field mustard	mitochondrion	20.91	22.38
Bra011869.1-P	Field mustard	cytosol	23.53	22.22
Bra001972.1-P	Field mustard	nucleus	23.53	21.95
Bra031210.1-P	Field mustard	nucleus	23.53	21.43
Bra030284.1-P	Field mustard	nucleus	23.53	21.43
Bra010693.1-P	Field mustard	nucleus	22.88	21.21
Bra014000.1-P	Field mustard	mitochondrion	27.45	18.92
Bra003841.1-P	Field mustard	cytosol, nucleus, plastid	31.37	18.68
Bra008020.1-P	Field mustard	endoplasmic reticulum	22.22	16.35
Bra008142.1-P	Field mustard	mitochondrion	26.8	15.53
Bra025205.1-P	Field mustard	nucleus	22.22	14.66
Bra032933.1-P	Field mustard	nucleus	22.88	14.4
Bra015926.1-P	Field mustard	mitochondrion	26.8	14.39
Bra035944.1-P	Field mustard	plastid	24.18	14.07
Bra012986.1-P	Field mustard	mitochondrion	24.84	12.46
Bra031244.1-P	Field mustard	plastid	27.45	11.26
Bra005798.1-P	Field mustard	nucleus	19.61	9.8

Protein Annotations

EnsemblPlants:Bra029020.1	EnsemblPlants:Bra029020.1-P	EnsemblPlantsGene:Bra029020	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf
InterPro:RRM_dom	PANTHER:PTHR45392	PFAM:PF00076	PFscan:PS50102	SEG:seg	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI000253FEF5	UniProt:M4EJQ4	MapMan:16.12.5.2	:	:

Description

AT5G54580 (E=2e-067) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:-:5900238..5901369

Molecular Weight (calculated)

16642.7 Da

IEP (calculated)

9.936

GRAVY (calculated)

-0.312

Length

153 amino acids

Sequence
(BLAST)

001: MAMAMRLPAI ARAATEMAAA PVGLRRLFCS NATNFSFLSP QANSETPARP QADPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREPYRP QNNMPPSPYG NRY

Best Arabidopsis Sequence Match ( AT5G54580.1 )
(BLAST)

001: MAMAMRLPAI SRAVTEVASA PVGLRRLFCS NASRFSFLSP QAESQTPARP QAEPSTNLFV SGLSKRTTSE GLRTAFAQFG EVADAKVVTD RVSGYSKGFG
101: FVRYATLEDS AKGIAGMDGK FLDGWVIFAE YARPREQSQS YQPQNNMSRP PYYGNR

Arabidopsis Description

ORRM2Organelle RRM domain-containing protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FIU6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.