Factsheet for Bra022624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005798.1-P
Bra007528.1-P
Bra013824.1-P
Bra014494.1-P
Bra019213.1-P
Bra028719.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53060.1	Bra007528.1-P	AT3G60360.1	21798944
AT5G53060.1	Bra014494.1-P	AT3G60360.1	21798944
AT5G53060.1	Bra013824.1-P	AT4G24680.1	21798944
AT5G53060.1	Bra019213.1-P	AT4G24680.1	21798944
AT5G53060.1	Bra005798.1-P	AT5G04280.1	21798944
AT5G53060.1	Bra028719.1-P	AT5G06770.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27030	Canola	nucleus	99.24	98.65
Bra003085.1-P	Field mustard	nucleus	81.54	84.35
AT5G53060.1	Thale cress	nucleus	81.69	82.82
KRH64403	Soybean	nucleus	61.27	62.89
KRH53532	Soybean	nucleus	61.12	62.44
VIT_16s0098g01660.t01	Wine grape	nucleus	59.61	59.61
Solyc03g082980.2.1	Tomato	nucleus	58.09	57.48
PGSC0003DMT400047665	Potato	nucleus	57.94	55.83
HORVU7Hr1G082230.1	Barley	nucleus	45.99	48.56
GSMUA_Achr2P15270_001	Banana	nucleus	49.92	47.48
TraesCS7A01G333800.1	Wheat	nucleus	47.35	46.86
Os06t0342500-01	Rice	cytosol	46.44	46.37
TraesCS7D01G341400.1	Wheat	nucleus	47.05	46.21
KXG20038	Sorghum	nucleus	45.54	45.06
Zm00001d046033_P001	Maize	nucleus	44.93	44.53
TraesCS7B01G245400.2	Wheat	nucleus	47.05	43.8
Zm00001d037055_P003	Maize	nucleus	43.87	39.19
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	18.61	30.07
Bra026852.1-P	Field mustard	nucleus	21.03	28.66
Bra024789.1-P	Field mustard	cytosol	14.98	26.33
Bra008709.1-P	Field mustard	nucleus	20.57	26.31
Bra013302.1-P	Field mustard	nucleus	21.79	24.57
Bra025032.1-P	Field mustard	nucleus	23.3	23.84
Bra006294.1-P	Field mustard	nucleus	20.88	23.0
Bra014290.1-P	Field mustard	plastid	20.12	22.89
Bra038508.1-P	Field mustard	cytosol, plastid	19.82	20.5
Bra024292.1-P	Field mustard	nucleus	26.17	20.19
Bra030226.1-P	Field mustard	plastid	17.85	19.03
Bra001111.1-P	Field mustard	cytosol	10.74	18.21
Bra013940.1-P	Field mustard	cytosol	10.44	16.24
Bra019133.1-P	Field mustard	cytosol	9.38	15.58

Protein Annotations

EnsemblPlants:Bra022624.1	EnsemblPlants:Bra022624.1-P	EnsemblPlantsGene:Bra022624	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF134	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002546DE9	UniProt:M4E1H6	MapMan:35.1	:

Description

AT5G53060 (E=5e-213) | KH domain-containing protein

Coordinates

chrA02:-:8446167..8449220

Molecular Weight (calculated)

72713.5 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.503

Length

661 amino acids

Sequence
(BLAST)

001: MERSRSKRNY HYVQDYDQDS IPRSKPRFNN NYGGGGGNNR YRGGVGGGGN GRPSKSPPET MATTTYRVLC HDAKAGGVIG KSGSIIKSIR QHTGAWINVH
101: ELLPGDAERI IEISDNRRRD PDGRMPSFSP AQEALFSVHD RILESEPQFG AEDEEDYGGV RGGGGRVVTR LVVSKLHVGC LLGKGGKIIE QMRIETKTHI
201: RILPRETNLP RCVSLSEEIV QIVGEAAAVR NALAIVSSRL RESQHRDRSH LQGRVHSSPE RSFSPADDYI PQQIRQTSDR FHYRNNSFSS RQSNYAEEEE
301: APVGENVQPF YTEELVFRIL CPVEKIVKVV GEAEGIVDLL QNEIGVDVRV SEPVAGSDEQ IITISSEEAP DDQFFPAQEA LLHIQTRIVD LIPDEDNIIT
401: TRLLVSSRDS VCLEGKAGSV SEISRVTGAS VQILPREEMP RCVSTNDVVV QITGEIRAAR DALVELTLRL RSHMYRELSQ KETPPASTST TGPLEGVAGV
501: IEVASSNNTT QPREGLSIAP QYKESGGSVA KAGESEQREE VPNTANRMSV PLVTRSTLEV VLPDQVIPKL VTKSRNKLAQ ISEWSGASVT LVDDRPGETQ
601: NVIRISGTPE QAERAQSLLQ GFILSKEQAF HPPDGDVFGN WFLDRTCTPV TLDLDYTPAQ S

Best Arabidopsis Sequence Match ( AT5G53060.1 )
(BLAST)

001: MERSRSKRNY HYDQDYDGDS MPRSKPRYNN NYHFGGGGGG NNRYRGGGGG GGGNGRPSKS HPETMATTTY RILCHDAKAG GVIGKSGTII KSIRQHTGAW
101: INVHELVPGD AERIIEISDN RRRDPDGRMP SFSPAQEALF SVHDRILESE AQFGYGGPPP EEEEDYGGVR PGGGRVVTRL VVSRMHVGCL LGKGGKIIEQ
201: MRIETKTHIR ILPRESNLPR CVSLSEEIVQ IVGELNAVKN ALAIVSSRLR ESQHRDRSNF QGRSHSPERS FAAAGDDYMP QLRRQSSDRF PRGNFRNNNF
301: SSRQSNYAEE APAVPVGENV YSEELVFQIL CPADKIVRVV GESQGIIDLL QNEIGVDVRV SDPVAGSDEQ IITISSEEAP DDPFFPAQEA LLHIQTQIID
401: LIPDKDNLIT TRLLVPSRDS ICLEGKAGSV SEISRLTGTS VQILAREEIP RCASINDVVI QITGEIRAAR EALVELTLLL RSHMFKELSQ KETPPASTST
501: TGPLEGVAGV MEVASSNNTI QSREGPTSSN LNLQQVSTIL PQFKEGFGSV AKAGESEHRE EVPVTTSRMA VPLVTRSTLE VVLPEAVVPK LVTKSRNKLA
601: QISEWSGASV TIVEDRPEET QNIIRISGTP EQAERAQSLL QGFILSIQED GP

Arabidopsis Description

RCF3RNA-binding KH domain-containing protein RCF3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.