Factsheet for Bra008709.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69536	Canola	nucleus	98.26	95.49
AT5G15270.2	Thale cress	nucleus	83.75	79.01
Bra006294.1-P	Field mustard	nucleus	85.3	73.5
KRH58152	Soybean	cytosol	14.51	59.06
VIT_14s0108g01040.t01	Wine grape	nucleus	62.09	58.58
KRG93559	Soybean	nucleus	62.09	58.58
KRH40065	Soybean	nucleus	60.54	57.96
KRH18467	Soybean	nucleus	60.73	57.3
KRH01196	Soybean	nucleus	60.15	57.27
PGSC0003DMT400003371	Potato	nucleus	58.41	55.82
PGSC0003DMT400064701	Potato	nucleus	59.57	55.5
Bra019674.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.43	51.1
Solyc02g088120.2.1	Tomato	nucleus	51.06	50.29
VIT_09s0002g00070.t01	Wine grape	mitochondrion	12.38	50.0
Solyc02g067210.2.1	Tomato	nucleus	59.38	49.84
Bra026852.1-P	Field mustard	nucleus	45.45	48.45
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	21.47	47.03
Bra024789.1-P	Field mustard	cytosol	31.53	43.35
VIT_14s0006g00030.t01	Wine grape	cytosol	22.24	40.64
Bra013302.1-P	Field mustard	nucleus	28.24	24.91
Bra025032.1-P	Field mustard	nucleus	29.98	23.99
Bra014290.1-P	Field mustard	plastid	25.73	22.89
Bra001111.1-P	Field mustard	cytosol	17.21	22.82
Bra003085.1-P	Field mustard	nucleus	26.69	21.6
Bra022624.1-P	Field mustard	nucleus	26.31	20.57
Bra030226.1-P	Field mustard	plastid	23.98	20.0
Bra038508.1-P	Field mustard	cytosol, plastid	23.98	19.41
Bra013940.1-P	Field mustard	cytosol	15.67	19.06
Bra019133.1-P	Field mustard	cytosol	13.54	17.59
Bra024292.1-P	Field mustard	nucleus	28.63	17.27

Protein Annotations

EnsemblPlants:Bra008709.1	EnsemblPlants:Bra008709.1-P	EnsemblPlantsGene:Bra008709	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1
InterPro:KH_dom_type_1_sf	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	PFAM:PF00013	PFscan:PS50084	SEG:seg
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0002544FC5	UniProt:M4CWW2	MapMan:35.1	:

Description

AT5G15270 (E=1e-207) | KH domain-containing protein

Coordinates

chrA10:-:13498376..13500235

Molecular Weight (calculated)

56039.4 Da

IEP (calculated)

8.003

GRAVY (calculated)

-0.410

Length

517 amino acids

Sequence
(BLAST)

001: MSPEHRDTHW KRSRPQSDDD DDTGSKRRHR GSDDRDSLAI DTVFRYLCPV KKIGSVIGRG GDIVKQLRME TRAKIKIGEA VTGCDERVVT IFSASDETNE
101: VGDGERVLLS PAQDALFRVH DRVVAADGGD GSDGERNVTA KMLVPSDQIG CVLGRGGQVV QNIRSETGAH IRIVKDRNMP LCALSSDELI QISGEVLIVK
201: KALHQIASRL HENPSRTQNI LSSAPPLMSH ACGSRIVGIA PLMDPYSRDL SRPLYQALRN DPPAATDFYI RLVSPADNIA SVIGKGGALI NQLRQETRAT
301: IKVDSARTEG NDCLITISAR EVFDEAYSPT IEAAMRLQSK CSDKVERDSG LVSFTTRLLV PSSRIGCLLG KGGAIITEMR RMTKANIRVL GKDNLPKVAS
401: QDDEMVQISG EFDVAKDALI QITSRLRANV FDREGSVSTL MPVLPYVPVA LDAGDRLDYD RRDSRRPERS NHYPGGYGSS GLSEGYSRYG APVGGSSSSS
501: TYGVYGGYAS GRSGSSG

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.