Factsheet for VIT_14s0108g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g00070.t01	Wine grape	mitochondrion	20.26	86.72
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	34.31	79.66
KRG93559	Soybean	nucleus	78.47	78.47
KRH18467	Soybean	nucleus	77.55	77.55
PGSC0003DMT400003371	Potato	nucleus	75.36	76.34
KRH40065	Soybean	nucleus	74.27	75.37
KRH01196	Soybean	nucleus	73.91	74.59
PGSC0003DMT400064701	Potato	nucleus	74.82	73.87
VIT_01s0026g02650.t01	Wine grape	nucleus	72.26	69.23
VIT_14s0006g00030.t01	Wine grape	cytosol	35.4	68.55
Solyc02g088120.2.1	Tomato	nucleus	64.96	67.81
Solyc02g067210.2.1	Tomato	nucleus	74.64	66.4
AT5G15270.2	Thale cress	nucleus	64.42	64.42
CDY60930	Canola	nucleus	60.77	62.59
Bra008709.1-P	Field mustard	nucleus	58.58	62.09
CDX69536	Canola	nucleus	59.85	61.65
CDX70604	Canola	nucleus	62.59	59.14
KRH58152	Soybean	cytosol	13.32	57.48
CDX78623	Canola	nucleus	62.59	57.17
Bra006294.1-P	Field mustard	nucleus	62.41	57.0
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	38.32	31.07
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	31.02	27.29
VIT_15s0021g01940.t01	Wine grape	nucleus	16.61	26.3
VIT_18s0001g08280.t01	Wine grape	cytosol	33.39	26.11
VIT_07s0141g00800.t01	Wine grape	cytosol	20.44	25.87
VIT_03s0038g00420.t01	Wine grape	plastid	30.29	25.62
VIT_09s0054g00450.t01	Wine grape	plastid	32.66	25.43
VIT_16s0098g01660.t01	Wine grape	nucleus	28.1	23.3
VIT_14s0081g00440.t01	Wine grape	cytosol	20.8	22.31
VIT_11s0052g00030.t01	Wine grape	plastid	18.8	22.1

Protein Annotations

EntrezGene:100261236	wikigene:100261236	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	ProteinID:CBI22240
ProteinID:CBI22240.3	UniProt:D7SXE3	EMBL:FN595239	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100261236
wikigene:LOC100261236	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF151	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI00015CA0B7	ArrayExpress:VIT_14s0108g01040	EnsemblPlantsGene:VIT_14s0108g01040	EnsemblPlants:VIT_14s0108g01040.t01	unigene:Vvi.4164
RefSeq:XP_002283766	RefSeq:XP_002283766.1	RefSeq:XP_010661078.1	RefSeq:XP_010661079.1	SEG:seg	:

Description

No Description!

Coordinates

chr14:+:29678016..29681847

Molecular Weight (calculated)

58074.1 Da

IEP (calculated)

6.209

GRAVY (calculated)

-0.386

Length

548 amino acids

Sequence
(BLAST)

001: MAGQRNSYGK RAHSQSDYGD NGGNKRRNPG DDRDPFTIEP EDTVYRYLCP GRKIGSIIGR GGEIVKQLRV DTKSKIRIGE TVPGCEERVV TIYSSSDETN
101: AFDDSDTFVS PAQDALFRVH DRVVSEEVHG EDSEEASQVT VRLLVPSDQI GCVIGKGGQI IQSIRSESGA QVRILKDDHL PSCALSSDEL VQISGEPSLV
201: RKALYQIASR LHDNPSRSQH LLASAVPTGY SSGGSLMGPT SGAPIMGLAP LVGTYGGYRG DSGDWSRSLY SAPRDEASSK EFSLRLVCPI GNIGGVIGKG
301: GVIINQIRQE SGAAIKVDST SAAEADDCLI AISAKEFFED TFSPTIEAAV RLQPRCSEKV ERDSGIVSFT TRLLVPTSRI GCLIGKGGAI ITEMRKLTKA
401: NIRILSKENL PKVASEDDEM VQIAGDLDVA KDALIQVTTR LRANLFDREG AVSAFVPVLP YLPMAADGSD GLKYDGRDNK RHGRGPSYSG GYGGSSDLAA
501: ADAYGGYGSQ IGGSGSGYGA YGGYSSGRGG GSGVSGQNPA SRRKSYGY

Best Arabidopsis Sequence Match ( AT5G15270.3 )
(BLAST)

001: MSPDHRMSPD HRDSHRKRSR PQSDYDDNGG SKRRYRGDDR DSLVIDRDDT VFRYLCPVKK IGSVIGRGGD IVKQLRNDTR SKIRIGEAIP GCDERVITIY
101: SPSDETNAFG DGEKVLSPAQ DALFRIHDRV VADDARSEDS PEGEKQVTAK LLVPSDQIGC ILGRGGQIVQ NIRSETGAQI RIVKDRNMPL CALNSDELIQ
201: ISGEVLIVKK ALLQIASRLH ENPSRSQNLL SSSGGYPAGS LMSHAGGPRL VGLAPLMGSY GRDAGDWSRP LYQPPRNDPP ATEFFIRLVS PVENIASVIG
301: KGGALINQLR QETRATIKVD SSRTEGNDCL ITISAREVFE DAYSPTIEAV MRLQPKCSDK VERDSGLVSF TTRLLVPSSR IGCILGKGGA IITEMRRMTK
401: ANIRILGKEN LPKVASDDDE MVQISGELDV AKEALIQITS RLRANVFDRE GAVSALMPVL PYVPVAPDAG DRFDYDSRDS RRLERGNPYP GGYGSSGVSA
501: EGYSPYGAPV GGSSSTPYGV YGGYASGRSS SSG

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:Q0WNX3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.