Factsheet for VIT_03s0038g00420.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH49838	Soybean	plastid	54.32	59.66
KRH42077	Soybean	plastid	53.09	58.6
KRH21739	Soybean	plastid	61.88	56.08
Solyc01g106020.2.1	Tomato	plastid	54.32	54.49
PGSC0003DMT400083772	Potato	plastid	53.7	54.12
KRH10613	Soybean	plastid	58.64	52.27
CDX84522	Canola	nucleus	47.84	41.84
VIT_09s0054g00450.t01	Wine grape	plastid	40.43	37.22
Bra024292.1-P	Field mustard	nucleus	48.15	36.41
AT5G64390.3	Thale cress	nucleus	47.22	35.33
VIT_18s0001g08280.t01	Wine grape	cytosol	36.27	33.52
VIT_09s0002g00070.t01	Wine grape	mitochondrion	6.02	30.47
VIT_14s0108g01040.t01	Wine grape	nucleus	25.62	30.29
AT5G09560.1	Thale cress	cytosol	27.62	29.83
VIT_01s0026g02650.t01	Wine grape	nucleus	26.08	29.55
VIT_14s0006g02960.t01	Wine grape	nucleus, plastid	29.17	27.96
VIT_15s0021g01940.t01	Wine grape	nucleus	14.66	27.46
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	26.08	27.13
OQU88922	Sorghum	nucleus, peroxisome, plastid	26.85	27.02
VIT_09s0002g00030.t01	Wine grape	cytosol, nucleus, plastid	9.72	26.69
VIT_16s0098g01660.t01	Wine grape	nucleus	26.39	25.87
Zm00001d019538_P002	Maize	plastid	26.08	25.04
Os07t0439100-01	Rice	cytosol	8.95	24.89
VIT_14s0006g00030.t01	Wine grape	cytosol	10.49	24.03
VIT_07s0141g00800.t01	Wine grape	cytosol	13.58	20.32
VIT_11s0052g00030.t01	Wine grape	plastid	13.73	19.1
VIT_14s0081g00440.t01	Wine grape	cytosol	14.35	18.2

Protein Annotations

EntrezGene:100252230	wikigene:100252230	Gene3D:3.30.1370.10	MapMan:35.1	ProteinID:CCB60906	ProteinID:CCB60906.1
UniProt:F6I1T9	EMBL:FN596515	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EntrezGene:LOC100252230	wikigene:LOC100252230
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF173	SMART:SM00322	SUPFAM:SSF54791
TIGR:TC59782	UniParc:UPI0001985ABA	ArrayExpress:VIT_03s0038g00420	EnsemblPlantsGene:VIT_03s0038g00420	EnsemblPlants:VIT_03s0038g00420.t01	unigene:Vvi.25408
unigene:Vvi.912	RefSeq:XP_002269250	RefSeq:XP_002269250.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3_random:+:391120..407735

Molecular Weight (calculated)

68269.9 Da

IEP (calculated)

9.496

GRAVY (calculated)

-0.151

Length

648 amino acids

Sequence
(BLAST)

001: MEASFLSPPA KRSIYTATGM PDPIPMAYAP NGSSKRSKPP PPPIPVPAGH VAFRLLCHAS RIGGVIGKSG VIVKQLQSDT GARIRVEDSP STSDHRVILV
101: IAPASVNRRI ALQGSSEEVE ASAAQEAVLR VFERILEVAA VVDGVPPGGV VSCRLLAETS QVGSVIGKGG KVVEKIRRES GSKIKVLTAE KLPTCAASTD
201: EMVEIEGDVL AVKKALVAVS RRLQDCPNVD KTKLIGGRPL EVVPQQSLPD PRVDLFQQRG SVLPPIPSNT ISYASGSRPL SINTERISTL DPKTSQQEVI
301: FKILCSNDRV GGVIGKGGTI VKALQNEAGA SISVGAPVAE CDERLITITA SENPESRYSP AQNGVILVFN RSIEAGIEKG LDSGSKGSPV SARLVVPSNQ
401: VGCLMGKGGT IISEMRKASG AGIRIIGSDQ VPKCASENDQ VVQISGEFVN VQDGLYHITG RLRDNLFPSK TLNGAGIRSS SAMNEISPYG RVRDPASFGL
501: HSSVGVSPSF SRHTTLTQSM DHLGLSHSLD HPTSPRLWPS QTVTGVNPRN IKGGIELGSG SKSAIITNTT VEIVIPENVI GSVYGENGNN LARLRKISGA
601: KVTLHEPRPG TSDRIVIISG TPDETQAAQS LLQAFIHTGP KVPDQTRT

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.