CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, peroxisome, plastid

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, peroxisome, plastid
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019538_P002	Maize	plastid	88.04	84.0
Os07t0439100-01	Rice	cytosol	16.61	45.92
VIT_03s0038g00420.t01	Wine grape	plastid	27.02	26.85
KRH49838	Soybean	plastid	24.53	26.78
KRH42077	Soybean	plastid	24.07	26.41
PGSC0003DMT400041750	Potato	plastid	23.91	25.12
KRH39475	Soybean	plastid	23.6	24.88
PGSC0003DMT400083772	Potato	plastid	24.69	24.73
Solyc11g010840.1.1	Tomato	plastid	23.29	24.47
Solyc01g106020.2.1	Tomato	plastid	24.53	24.46
KXG39277	Sorghum	nucleus	19.25	22.88
KRH21739	Soybean	plastid	25.31	22.8
KRH74462	Soybean	nucleus	21.74	22.73
KRH10613	Soybean	plastid	24.53	21.73
CDY13742	Canola	mitochondrion	21.12	21.73
CDX89490	Canola	cytosol	20.81	21.65
AT2G22600.1	Thale cress	mitochondrion	21.12	21.52
CDX84522	Canola	nucleus	24.69	21.46
KXG35952	Sorghum	plastid	20.65	21.38
Bra030226.1-P	Field mustard	plastid	20.5	21.29
Bra038508.1-P	Field mustard	cytosol, plastid	21.12	21.28
CDY25609	Canola	cytosol	20.5	21.26
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	20.5	20.92
OQU80050	Sorghum	nucleus	20.03	20.51
AT5G09560.1	Thale cress	cytosol	18.94	20.33
Bra024292.1-P	Field mustard	nucleus	25.0	18.79
EES02175	Sorghum	nucleus, plastid	20.65	18.58
KXG20038	Sorghum	nucleus	18.94	18.26
EER94472	Sorghum	cytosol	12.73	18.14
AT5G64390.3	Thale cress	nucleus	24.07	17.9
EES16283	Sorghum	cytosol	11.8	14.93
KXG38256	Sorghum	nucleus	18.32	14.75
EER94248	Sorghum	nucleus	12.89	14.12
KXG29352	Sorghum	cytosol	10.4	12.98
OQU91315	Sorghum	plastid	8.39	11.11

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	UniProt:A0A1B6QAR6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	ProteinID:KXG35015.1
EnsemblPlants:OQU88922	ProteinID:OQU88922	ProteinID:OQU88922.1	PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288
PANTHER:PTHR10288:SF146	SMART:SM00322	EnsemblPlantsGene:SORBI_3002G121900	SUPFAM:SSF54791	UniParc:UPI00081AD69D	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:16108284..16115608

Molecular Weight (calculated)

68210.3 Da

IEP (calculated)

4.513

GRAVY (calculated)

-0.113

Length

644 amino acids

Sequence
(BLAST)

001: MAAAKPQLQF SPHAAASPAD ADAGPADADA GFAVFRLLLP PSFSDADTMR LYAAVNPLRR RTAALQVRVE PLDPASAGGR VVAAVLGPTA PVRRVEASSS
101: SAEPLALSPA QEALVAVIDT QGALYCAGEE EARGKAPPGR VTCLLLVDAD RLEASAGRGV MERIALEAGA DVRVAMWEEG ALPPRGQPPE EVVEITGDRT
201: AVRKALVALS SCLQGDLPIG NSTAYDKKEG SILPWASSEV PGPNMGTSCS EVSTEFAQGS VAKTHCPEGN TGYVQSKTLQ QVSFRLLLPT YLAGGLIGKR
301: GLIIKGIEDE TGACIDVGAP VTGCKERVIT ICALESPDSE YHIVQSALLL IYDRMVEIES NIHSSFEKAS QFSARALVLK THFDCLVGLG GSIIKEMVNA
401: TGARIQILDD SDVPACASNF ELVLQITGEQ VNIRNALSLV CWKLRNHIFS NETDYNNSHI SSSEIASSNA TNQANNYSTS QYSMDNAHKV DHGPSLSYGV
501: DSVEKSFSDL ELSSSEIQKP DNGNGVRINN SDSGIQNPTE WNDIVTNNLN HGIIFSEENN LVRGVEHASI TRITYETAVS GSILTLVYGD NGSNLAKLTE
601: VSGADIAVYN PPSEGNEAMI VVSGPPDQAQ SAQRLLVELI LQGQ

Best Arabidopsis Sequence Match ( AT5G64390.1 )
(BLAST)

001: MERNSVKFHA EKRSGAFDPG SGFGSSKRVK THHTQLLSAL VVPVGHAAFR LLCPLSHVGA VIGKSGNVIK QLQQSTGAKI RVEEPPSGSP DRVITIIAQA
101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM
201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE
301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT
401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA
501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF
601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF
701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSGHKS AIVTNTTVEI RVPANAMSFV YGEQGYNLEQ
801: LRQISGARVI IHEPPLGTSD RIIVISGTPD QTQAAQNLLH AFILTGETSL SKKYNLN

Arabidopsis Description

HEN4RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KDM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.