Factsheet for AT2G22600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13742	Canola	mitochondrion	73.73	74.44
CDX89490	Canola	cytosol	72.31	73.83
CDY25609	Canola	cytosol	71.99	73.27
Bra030226.1-P	Field mustard	plastid	71.68	73.06
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	72.63	72.74
Bra038508.1-P	Field mustard	cytosol, plastid	73.42	72.61
KRH39475	Soybean	plastid	32.75	33.88
KRH74462	Soybean	nucleus	31.17	31.98
AT2G03110.1	Thale cress	cytosol	6.8	28.1
PGSC0003DMT400041750	Potato	plastid	26.9	27.73
Solyc11g010840.1.1	Tomato	plastid	26.58	27.41
AT1G51580.1	Thale cress	cytosol, plastid	25.79	26.25
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	17.72	23.38
AT5G15270.2	Thale cress	nucleus	20.25	23.36
AT5G09560.1	Thale cress	cytosol	20.57	21.67
OQU88922	Sorghum	nucleus, peroxisome, plastid	21.52	21.12
AT4G18375.2	Thale cress	nucleus	19.62	20.46
AT5G53060.1	Thale cress	nucleus	21.04	20.4
AT5G46190.2	Thale cress	cytosol	21.99	20.17
Zm00001d019538_P002	Maize	plastid	21.52	20.15
AT5G64390.3	Thale cress	nucleus	26.9	19.63
Os07t0439100-01	Rice	cytosol	6.49	17.6
AT4G26000.1	Thale cress	cytosol	12.03	15.35
AT3G04610.2	Thale cress	cytosol	10.76	11.79

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EntrezGene:816791	UniProt:A0A178W3C8	ProteinID:AEC07326.1
ArrayExpress:AT2G22600	EnsemblPlantsGene:AT2G22600	RefSeq:AT2G22600	TAIR:AT2G22600	RefSeq:AT2G22600-TAIR-G	EnsemblPlants:AT2G22600.1
TAIR:AT2G22600.1	UniProt:F4IJK5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
GO:GO:0008150	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	RefSeq:NP_850026.1
ProteinID:OAP11622.1	PFAM:PF00013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611
PO:PO:0007616	PO:PO:0009009	PO:PO:0009010	PO:PO:0009031	PO:PO:0009046	PO:PO:0009052
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF160
SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0000162372	SEG:seg	:	:

Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IJK5]

Coordinates

chr2:+:9596526..9599227

Molecular Weight (calculated)

67758.6 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.173

Length

632 amino acids

Sequence
(BLAST)

001: MNNRRGVTTA VSKRRPVIHV LPDETAIRVV CHASVIGGII GSNGYVVSKL RRETGTKIHC ESPVNGSDHW VVFIVGSTAV NQSILLTDRV GEFSGGEHED
101: WVTCEVSAAQ TALIRVLERS WVVLAAKDGG GVVDGEDEEA YCGILADRNQ IGAVLGLGGK NVEWMRRNSG AMIRVLPPPI CGTKNDELIQ ITGDVLAVKK
201: ALVMVSSYIQ NNAPLNGYPP PLSIKGYESL STDGNSEDPH SEFFPNLRSS SLSNATEIVA SNRHLPYDGG NSTERKVVFK IIFTSVVAGG IIGKQGTIIR
301: ALQNETGASI SVGAPLKVSG ERVVTVSARE NLESRYSHAQ NALALVFARS VEIDVEKGLR PGLHNGAIVK TKLLVPSHFA NSFNGNGNRE AIIATGADVH
401: ISVGNQVLEW ISENEVVIEI KGEYSHVQKA LTHVSSKLRE NLLPKKVLGE MRARVSNPYE SAGGRSQIYN LQPSQQDASR GDSLSVSAAV PDLKMVRSGA
501: EVLKSNSVMH TEVLKEVDEL NDFTLPQSLL EEDLTQGMKQ LQMSSNGDVS SLPPRSKGVS VRKITLELAV EKDALGSLYG RDGTGVDNLQ QISGANVDVK
601: DPTGTEATVL ISGNPEQART AMSLIESILT DQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.