CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39475	Soybean	plastid	86.2	86.91
KRH49838	Soybean	plastid	33.93	35.42
KRH42077	Soybean	plastid	32.95	34.58
AT2G22600.1	Thale cress	mitochondrion	31.98	31.17
CDY13742	Canola	mitochondrion	31.33	30.83
CDY25609	Canola	cytosol	31.01	30.76
Bra030226.1-P	Field mustard	plastid	30.84	30.65
KRH47290	Soybean	mitochondrion, nucleus	27.76	30.59
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	31.33	30.59
CDX89490	Canola	cytosol	30.68	30.53
Bra038508.1-P	Field mustard	cytosol, plastid	31.49	30.36
PGSC0003DMT400041750	Potato	plastid	30.19	30.34
Solyc11g010840.1.1	Tomato	plastid	29.87	30.02
KRH58152	Soybean	cytosol	6.17	29.92
KRH21739	Soybean	plastid	34.25	29.51
KRH44614	Soybean	mitochondrion, nucleus	26.14	28.5
KRH10613	Soybean	plastid	32.14	27.24
KRG93559	Soybean	nucleus	23.05	25.91
KRH18467	Soybean	nucleus	22.73	25.55
KRH01196	Soybean	nucleus	21.75	24.68
KRH40065	Soybean	nucleus	21.43	24.44
KRH52837	Soybean	plastid	25.81	23.52
KRH62129	Soybean	plastid	25.49	23.16
OQU88922	Sorghum	nucleus, peroxisome, plastid	22.73	21.74
KRH12329	Soybean	cytosol, nucleus	14.61	20.36
KRH53532	Soybean	nucleus	21.27	20.25
KRH58669	Soybean	endoplasmic reticulum, nucleus	20.29	20.13
KRH64403	Soybean	nucleus	20.94	20.03
KRH02776	Soybean	nucleus	14.12	19.95
KRH42565	Soybean	nucleus	19.97	19.68
KRH37335	Soybean	cytosol, nucleus	14.12	19.64
Zm00001d019538_P002	Maize	plastid	21.43	19.56
KRH19104	Soybean	nucleus	13.8	19.5
KRH00973	Soybean	nucleus, plastid	11.36	19.34
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	11.53	18.3
KRG97000	Soybean	nucleus	12.66	17.49
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	12.18	16.93
KRH71306	Soybean	nucleus	11.2	13.94
KRH67322	Soybean	nucleus	11.85	13.8
KRG95633	Soybean	nucleus	11.69	13.41
Os07t0439100-01	Rice	cytosol	5.03	13.3
KRH32136	Soybean	cytosol	11.69	12.74

Protein Annotations

EntrezGene:100793130	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	EMBL:ACUP02000032	EnsemblPlantsGene:GLYMA_01G021400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	UniProt:I1J4Z1	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH74462	ProteinID:KRH74462	ProteinID:KRH74462.1
PFAM:PF00013	PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF160	SMART:SM00322	SUPFAM:SSF54791
UniParc:UPI00023BADB5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:2171115..2176385

Molecular Weight (calculated)

66686.6 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.190

Length

616 amino acids

Sequence
(BLAST)

001: MQDPATSDTD HQTTPSPKRS NTTTTNRSSK RPVFKVLPGQ IAFRLVCHAS TVGGLIGSSG SIVSQLRRET GCKIHCEDSL SSAEDRVILV IGSLSPRKGL
101: LLGDGGEVEV SSAQEAVVRV FERVWDLEAE KGVNSNRAVN GEVFSKLLAH TSQIGAVVGK GGKNITAIRN NTGAKIRVFP PPQCATKDEE LVQITGGILA
201: VKKALISVSH CLQDCPPLCK VPVTSSTPTV SSSDRLSSDP NAELFPHLNS LLTSMEGLSI YERTTNSNET SNRDSKGAEH EVVFRLLCSN NVAGSVIGKR
301: GAIVRALESK TGASIIFAAP LSEHAERIVT ISAVESLESC NSPAQDAVIL VFARIIEDHI GKGFLQVSSM ESPVTARLLV ATSTVNCFSG NEGQVISELR
401: EVTGADIQIL HGESVPNGAS DEDVVVQITG EYRCVQNALY KITSRIRDNL SPNEVVAEAR PKSNWKVNKD PIKGKPFARG KSAFPSGRFL PRNAGVHAET
501: ILQNGELHTD LSENLERGRG NMFATVTNTT VEIIVSEHVF GSVYGEDGGN LDRIRQVQLL RFMILPLVQV EGKLSYLGHQ IKPLQRRACF KPLFKRDKQA
601: DGKLHFIISW CHEWCT

Best Arabidopsis Sequence Match ( AT2G22600.1 )
(BLAST)

001: MNNRRGVTTA VSKRRPVIHV LPDETAIRVV CHASVIGGII GSNGYVVSKL RRETGTKIHC ESPVNGSDHW VVFIVGSTAV NQSILLTDRV GEFSGGEHED
101: WVTCEVSAAQ TALIRVLERS WVVLAAKDGG GVVDGEDEEA YCGILADRNQ IGAVLGLGGK NVEWMRRNSG AMIRVLPPPI CGTKNDELIQ ITGDVLAVKK
201: ALVMVSSYIQ NNAPLNGYPP PLSIKGYESL STDGNSEDPH SEFFPNLRSS SLSNATEIVA SNRHLPYDGG NSTERKVVFK IIFTSVVAGG IIGKQGTIIR
301: ALQNETGASI SVGAPLKVSG ERVVTVSARE NLESRYSHAQ NALALVFARS VEIDVEKGLR PGLHNGAIVK TKLLVPSHFA NSFNGNGNRE AIIATGADVH
401: ISVGNQVLEW ISENEVVIEI KGEYSHVQKA LTHVSSKLRE NLLPKKVLGE MRARVSNPYE SAGGRSQIYN LQPSQQDASR GDSLSVSAAV PDLKMVRSGA
501: EVLKSNSVMH TEVLKEVDEL NDFTLPQSLL EEDLTQGMKQ LQMSSNGDVS SLPPRSKGVS VRKITLELAV EKDALGSLYG RDGTGVDNLQ QISGANVDVK
601: DPTGTEATVL ISGNPEQART AMSLIESILT DQ

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4IJK5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.