CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21739	Soybean	plastid	87.9	89.37
KRH49838	Soybean	plastid	54.88	67.63
KRH42077	Soybean	plastid	53.23	65.93
VIT_03s0038g00420.t01	Wine grape	plastid	52.27	58.64
Solyc01g106020.2.1	Tomato	plastid	43.88	49.38
PGSC0003DMT400083772	Potato	plastid	43.47	49.14
CDX84522	Canola	nucleus	41.54	40.76
KRH47290	Soybean	mitochondrion, nucleus	28.06	36.49
KRH39475	Soybean	plastid	30.26	36.01
Bra024292.1-P	Field mustard	nucleus	42.09	35.71
AT5G64390.3	Thale cress	nucleus	42.5	35.68
KRH44614	Soybean	mitochondrion, nucleus	26.82	34.51
KRH74462	Soybean	nucleus	27.24	32.14
KRH52837	Soybean	plastid	29.85	32.1
KRH62129	Soybean	plastid	29.02	31.12
KRG93559	Soybean	nucleus	22.28	29.56
KRH40065	Soybean	nucleus	21.87	29.44
KRH01196	Soybean	nucleus	21.6	28.91
KRH18467	Soybean	nucleus	21.6	28.65
KRH64403	Soybean	nucleus	24.48	27.64
KRH58152	Soybean	cytosol	4.81	27.56
KRH53532	Soybean	nucleus	24.35	27.36
AT5G09560.1	Thale cress	cytosol	22.15	26.83
KRH42565	Soybean	nucleus	21.6	25.12
KRH58669	Soybean	endoplasmic reticulum, nucleus	21.32	24.96
OQU88922	Sorghum	nucleus, peroxisome, plastid	21.73	24.53
Zm00001d019538_P002	Maize	plastid	21.6	23.26
Os07t0439100-01	Rice	cytosol	7.43	23.18
KRH00973	Soybean	nucleus, plastid	10.32	20.72
KRH68752	Soybean	cytoskeleton, cytosol, nucleus	11.97	19.64
KRH40252	Soybean	cytosol, golgi, nucleus, plastid	10.45	19.59
KRG97000	Soybean	nucleus	11.97	19.51
KRH02776	Soybean	nucleus	11.55	19.27
KRH19104	Soybean	nucleus	11.28	18.81
KRH37335	Soybean	cytosol, nucleus	11.0	18.06
KRH12329	Soybean	cytosol, nucleus	10.73	17.65
KRH67322	Soybean	nucleus	11.55	15.88
KRG95633	Soybean	nucleus	11.69	15.83
KRH71306	Soybean	nucleus	10.32	15.15
KRH32136	Soybean	cytosol	11.0	14.16

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	UniProt:A0A0R0G6M7	EMBL:ACUP02009149	EnsemblPlantsGene:GLYMA_15G058400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom
InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	EnsemblPlants:KRH10613	ProteinID:KRH10613	ProteinID:KRH10613.1	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF173	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0006EE0264
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:4517843..4523888

Molecular Weight (calculated)

77474.6 Da

IEP (calculated)

9.261

GRAVY (calculated)

-0.156

Length

727 amino acids

Sequence
(BLAST)

001: MGSNFLSPPA KRSAPDPYPF HPNGPSKRSR QSKPPPPLSV PPGHVAFRLL CNASRIGGVI GKSGSVIKTL QQSTGAKIRI EDAPQELPDR IILVIADAAL
101: SGKILLRNEE VIEVSKAQEA LLKVFDRILK VAAETEASTV MSCRLVADAA QAGSVIGKGG KVVERIKKET GCKIRVLTDD LPLCASASDE IIEVFLLPAL
201: LRFSICHSTF RLAPQSRSVT TDDCHPVDRT KMMGSKPYEI VQYEALDALP RATSTAAPRV TLTAAPRGTL TAVQHETVDH LLLRSSALST LSSSSNSYAT
301: RIHSLPTEVN RVSSLEPKAL KQEVTFRILC SNDRVGGVIG KGGNIVRALQ SETGATISIG PAVAECEDRL ITIAASENPE SRYSPAQKAA VLVFSRSIEV
401: GFEKGLDSGL NKGSIVTVRL VVPSSQVGCL IGKGGVIVSE MRKATGANIR IIGTDQVPKC ASDNDQVVQI SGEFSSVQDA LYNAMGRLRD NLFVSTQNSA
501: GTRSLSSLRV DTSPYGRQQD VVPLGSQLPP ATSHSLSRHT FAQGIDHLGL SRNLDHPSSP GLWTRNLDRP SSPGLWTRNL DRPSSPGLWT RNLDRPSSPG
601: LWTRNLDRPS SPGLWAPPTV AGINSRGIND FSLGLTSRKG GLELVSGSKS AIVTNTIVEI VVPDDTIDCV YGENGSNLAR LRQISGANVV VHEPRPGTSD
701: RIIVISGTPD ETQAAQSLLQ AFILSGS

Best Arabidopsis Sequence Match ( AT5G64390.1 )
(BLAST)

001: MERNSVKFHA EKRSGAFDPG SGFGSSKRVK THHTQLLSAL VVPVGHAAFR LLCPLSHVGA VIGKSGNVIK QLQQSTGAKI RVEEPPSGSP DRVITIIAQA
101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM
201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE
301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT
401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA
501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF
601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF
701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSGHKS AIVTNTTVEI RVPANAMSFV YGEQGYNLEQ
801: LRQISGARVI IHEPPLGTSD RIIVISGTPD QTQAAQNLLH AFILTGETSL SKKYNLN

Arabidopsis Description

HEN4RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KDM9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.