Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84522 | Canola | nucleus | 68.36 | 79.89 |
| Bra024292.1-P | Field mustard | nucleus | 76.67 | 77.48 |
| KRH49838 | Soybean | plastid | 32.45 | 47.63 |
| VIT_03s0038g00420.t01 | Wine grape | plastid | 35.33 | 47.22 |
| KRH42077 | Soybean | plastid | 31.41 | 46.34 |
| KRH21739 | Soybean | plastid | 37.41 | 45.31 |
| KRH10613 | Soybean | plastid | 35.68 | 42.5 |
| PGSC0003DMT400083772 | Potato | plastid | 31.41 | 42.3 |
| Solyc01g106020.2.1 | Tomato | plastid | 30.95 | 41.49 |
| AT5G09560.1 | Thale cress | cytosol | 23.56 | 34.0 |
| AT1G51580.1 | Thale cress | cytosol, plastid | 22.06 | 30.76 |
| AT5G15270.2 | Thale cress | nucleus | 17.9 | 28.28 |
| AT2G03110.1 | Thale cress | cytosol | 4.97 | 28.1 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 15.36 | 27.77 |
| AT2G22600.1 | Thale cress | mitochondrion | 19.63 | 26.9 |
| AT4G18375.2 | Thale cress | nucleus | 18.24 | 26.07 |
| AT5G53060.1 | Thale cress | nucleus | 19.52 | 25.92 |
| Os07t0439100-01 | Rice | cytosol | 6.81 | 25.32 |
| AT5G46190.2 | Thale cress | cytosol | 19.86 | 24.96 |
| OQU88922 | Sorghum | nucleus, peroxisome, plastid | 17.9 | 24.07 |
| Zm00001d019538_P002 | Maize | plastid | 17.55 | 22.52 |
| AT4G26000.1 | Thale cress | cytosol | 10.39 | 18.18 |
| AT3G04610.2 | Thale cress | cytosol | 9.47 | 14.21 |
Protein Annotations
| Gene3D:3.30.1370.10 | Gene3D:3.30.310.210 | MapMan:35.1 | EntrezGene:836560 | ProteinID:AED97885.1 | ArrayExpress:AT5G64390 |
| EnsemblPlantsGene:AT5G64390 | RefSeq:AT5G64390 | TAIR:AT5G64390 | RefSeq:AT5G64390-TAIR-G | EnsemblPlants:AT5G64390.3 | TAIR:AT5G64390.3 |
| UniProt:F4KDM9 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006397 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0010093 | Symbol:HEN4 | InterPro:IPR036612 | InterPro:KH_dom | InterPro:KH_dom_type_1 |
| InterPro:KH_dom_type_1_sf | RefSeq:NP_001190612.1 | PFAM:PF00013 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50084 |
| PANTHER:PTHR10288 | PANTHER:PTHR10288:SF173 | SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI0001E930E9 | SEG:seg |
Description
HEN4RNA-binding KH domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4KDM9]
Coordinates
chr5:+:25743346..25747652
Molecular Weight (calculated)
94709.2 Da
IEP (calculated)
7.577
GRAVY (calculated)
-0.395
Length
866 amino acids
Sequence
(BLAST)
(BLAST)
001: MERNSVKFHA EKRSGAFDPG SGFGSSKRVK THHTQLLSAL VVPVGHAAFR LLCPLSHVGA VIGKSGNVIK QLQQSTGAKI RVEEPPSGSP DRVITIIAQA
101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM
201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE
301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT
401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA
501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF
601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF
701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSLHAR LVFSSGHKSA IVTNTTVEIR VPANAMSFVY
801: GEQGYNLEQL RQISGARVII HEPPLGTSDR IIVISGTPDQ TQAAQNLLHA FILTGETSLS KKYNLN
101: DSKSRVKLGA NNNGNAEGEK KEEEVEVSKA QGALIKVFEL LAAEADSDTV VCRLLTESSH AGAVIGKGGQ MVGSIRKETG CKISIRIENL PICADTDDEM
201: VEVEGNAIAV KKALVSISRC LQNCQSIDKV RMVGNRPLEK EFQASLHRPI ETIIQESLPR SVEVNPYDYR LRNDEIFPRG TVARANDVIP HDTLHLRRIE
301: AVPQGALRMH IEADRQDVLR RHVEADRQDA LRRRIDVVPQ ETLYMPSDVL RGDCFRQHRE RDDSHDSLHR PFEMVPRDAM GMPFESFPRD AYGRPIETMT
401: QETLRGQSAD YLAHRYSTLD THPHSFTTSA SMANTATMKP PPSEVEVGNQ DVVFKILCST ENAGGVIGTG GKVVRMLHSE TGAFINVGNT LDDCEERLIA
501: VTASENPECQ SSPAQKAIML IFSRLFELAT NKILDNGPRS SITARLVVPT SQIGCVLGKG GVIVSEMRKT TGAAIQILKV EQNPKCISEN DQVVQITGEF
601: PNVREAIFHI TSRLRDSVFS NSMKNSLAKS SSALTTERFY DRQSDNPLSI GSHQSVSNPA TNSSSLHRRS EDSFLSGSHS SVNYSRSVGT DPYIRPEDPF
701: PDRFNPSAGY SHNFGRRFTM DHSDNSHHLT EAPSRLWASP PPAAPRGLSD ASGGLSSARA GHVLGSLHAR LVFSSGHKSA IVTNTTVEIR VPANAMSFVY
801: GEQGYNLEQL RQISGARVII HEPPLGTSDR IIVISGTPDQ TQAAQNLLHA FILTGETSLS KKYNLN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.