Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33460 | Canola | nucleus | 75.76 | 81.44 |
| Bra025032.1-P | Field mustard | nucleus | 76.05 | 81.11 |
| CDX77643 | Canola | nucleus | 74.75 | 80.59 |
| AT4G18375.2 | Thale cress | nucleus | 58.49 | 66.5 |
| VIT_10s0003g03860.t01 | Wine grape | cytosol, nucleus, plastid | 54.57 | 60.35 |
| KRH42565 | Soybean | nucleus | 53.56 | 59.04 |
| KRH58669 | Soybean | endoplasmic reticulum, nucleus | 52.39 | 58.13 |
| Solyc08g048500.2.1 | Tomato | nucleus | 50.8 | 56.73 |
| PGSC0003DMT400076798 | Potato | nucleus | 50.94 | 56.61 |
| GSMUA_Achr6P03670_001 | Banana | cytosol, nucleus, plastid | 47.31 | 50.08 |
| GSMUA_Achr9P18150_001 | Banana | endoplasmic reticulum, golgi | 47.31 | 47.18 |
| TraesCS3A01G512500.1 | Wheat | nucleus | 42.53 | 46.43 |
| TraesCS3D01G519700.1 | Wheat | nucleus | 42.24 | 46.12 |
| OQU80050 | Sorghum | nucleus | 42.09 | 46.1 |
| TraesCS3B01G580700.1 | Wheat | nucleus | 42.09 | 45.96 |
| HORVU5Hr1G121900.1 | Barley | nucleus | 42.09 | 45.89 |
| TraesCS5B01G551800.1 | Wheat | nucleus | 41.94 | 45.8 |
| TraesCS4A01G333900.1 | Wheat | nucleus | 41.65 | 45.41 |
| HORVU0Hr1G007380.3 | Barley | mitochondrion, nucleus | 41.65 | 45.41 |
| TraesCS5D01G538200.3 | Wheat | nucleus | 41.51 | 45.4 |
| Zm00001d024270_P001 | Maize | nucleus | 41.22 | 44.94 |
| Zm00001d049390_P001 | Maize | nucleus | 40.93 | 44.69 |
| AT2G03110.1 | Thale cress | cytosol | 7.11 | 32.03 |
| AT1G14170.3 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 21.34 | 30.69 |
| AT5G15270.2 | Thale cress | nucleus | 23.22 | 29.2 |
| AT5G53060.1 | Thale cress | nucleus | 22.21 | 23.47 |
| AT1G51580.1 | Thale cress | cytosol, plastid | 20.9 | 23.19 |
| AT2G22600.1 | Thale cress | mitochondrion | 20.17 | 21.99 |
| AT5G09560.1 | Thale cress | cytosol | 18.87 | 21.67 |
| AT5G64390.3 | Thale cress | nucleus | 24.96 | 19.86 |
| AT4G26000.1 | Thale cress | cytosol | 13.06 | 18.18 |
| AT3G04610.2 | Thale cress | cytosol | 14.66 | 17.5 |
Protein Annotations
| Gene3D:3.30.1370.10 | MapMan:35.1 | EntrezGene:834661 | UniProt:A0A1P8BC43 | ProteinID:ANM69153.1 | ArrayExpress:AT5G46190 |
| EnsemblPlantsGene:AT5G46190 | RefSeq:AT5G46190 | TAIR:AT5G46190 | RefSeq:AT5G46190-TAIR-G | EnsemblPlants:AT5G46190.2 | Unigene:At.24400 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR036612 | InterPro:KH_dom |
| InterPro:KH_dom_type_1 | InterPro:KH_dom_type_1_sf | RefSeq:NP_001330854.1 | PFAM:PF00013 | PFscan:PS50084 | PANTHER:PTHR10288 |
| PANTHER:PTHR10288:SF137 | SMART:SM00322 | SUPFAM:SSF54791 | UniParc:UPI0001CA9A00 | SEG:seg | : |
Description
RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
Coordinates
chr5:-:18721752..18726249
Molecular Weight (calculated)
74792.2 Da
IEP (calculated)
8.080
GRAVY (calculated)
-0.187
Length
689 amino acids
Sequence
(BLAST)
(BLAST)
001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RVCLIFIFIF PSSLLSDCHS FIRLFFPLSY ITFSHGMCPL SLSLSQISGA MIEISDSKNS HGGRVALISG TSEQKRTAEN LFQAFIMST
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RVCLIFIFIF PSSLLSDCHS FIRLFFPLSY ITFSHGMCPL SLSLSQISGA MIEISDSKNS HGGRVALISG TSEQKRTAEN LFQAFIMST
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.