Factsheet for Solyc08g048500.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076798	Potato	nucleus	97.73	97.26
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	74.39	73.68
KRH42565	Soybean	nucleus	70.18	69.28
KRH58669	Soybean	endoplasmic reticulum, nucleus	69.04	68.6
CDX99470	Canola	nucleus	25.28	57.56
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	58.35	55.3
CDX77643	Canola	nucleus	56.56	54.62
CDY33460	Canola	nucleus	56.24	54.13
Bra025032.1-P	Field mustard	nucleus	56.4	53.87
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	58.83	52.53
OQU80050	Sorghum	nucleus	53.0	51.99
AT4G18375.2	Thale cress	nucleus	50.57	51.49
CDX78846	Canola	nucleus	47.65	51.22
HORVU5Hr1G121900.1	Barley	nucleus	52.35	51.11
Zm00001d024270_P001	Maize	nucleus	52.35	51.11
TraesCS3D01G519700.1	Wheat	nucleus	52.19	51.03
TraesCS3B01G580700.1	Wheat	nucleus	52.19	51.03
Bra013302.1-P	Field mustard	nucleus	48.3	50.85
AT5G46190.2	Thale cress	cytosol	56.73	50.8
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	51.86	50.63
TraesCS3A01G512500.1	Wheat	nucleus	51.7	50.55
TraesCS4A01G333900.1	Wheat	nucleus	51.22	50.0
TraesCS5B01G551800.1	Wheat	nucleus	51.05	49.92
TraesCS5D01G538200.3	Wheat	nucleus	50.73	49.68
Zm00001d049390_P001	Maize	nucleus	50.73	49.6
CDX99471	Canola	nucleus	16.21	46.51
Solyc05g007810.2.1	Tomato	nucleus	25.28	29.32
Solyc02g067210.2.1	Tomato	nucleus	25.61	25.65
Solyc12g055780.1.1	Tomato	cytosol, nucleus	15.23	25.41
Solyc02g088120.2.1	Tomato	nucleus	21.56	25.33
Solyc04g077060.2.1	Tomato	nucleus	18.8	24.52
Solyc01g106020.2.1	Tomato	plastid	24.96	23.84
Solyc11g010840.1.1	Tomato	plastid	22.37	22.51
Solyc03g034200.2.1	Tomato	nucleus	25.77	22.49
Solyc12g055790.1.1	Tomato	nucleus	8.91	22.09
Solyc03g082980.2.1	Tomato	nucleus	23.01	21.26
Solyc01g097010.2.1	Tomato	nucleus	12.16	20.66
Solyc01g090480.2.1	Tomato	nucleus	14.1	19.59
Solyc09g066120.2.1	Tomato	nucleus	15.23	19.11
Solyc05g041740.1.1	Tomato	plastid	6.32	18.57
Solyc07g008490.2.1	Tomato	nucleus	13.13	16.8
Solyc05g043210.1.1	Tomato	plastid	6.81	16.6
Solyc08g074330.1.1	Tomato	plastid	6.0	16.3
Solyc06g084000.2.1	Tomato	nucleus	6.16	16.03
Solyc05g042180.1.1	Tomato	plastid	6.97	15.75
Solyc05g043200.1.1	Tomato	nucleus, peroxisome, plastid	7.13	13.75
Solyc06g084010.2.1	Tomato	nucleus	7.13	13.62

Protein Annotations

EnsemblPlants:Solyc08g048500.2.1	EnsemblPlantsGene:Solyc08g048500.2	Gene3D:3.30.1370.10	Gene3D:3.30.310.210	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	PFAM:PF00013	PFscan:PS50084	SEG:seg	SMART:SM00322
SUPFAM:SSF54791	UniParc:UPI000276C871	UniProt:K4CKK0	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr8:-:12403210..12408132

Molecular Weight (calculated)

66454.5 Da

IEP (calculated)

7.876

GRAVY (calculated)

-0.277

Length

617 amino acids

Sequence
(BLAST)

001: MGETGKRSRR DDGDNKNQKR RTDRDEKNDD ELIVYRILCP NNVIGSVIGK NGKVINSIRS ETKAKVKVVD PFPGAKDRVI LVYCYVKEKE DVEVDQDFNE
101: KQPLCTAQDA LLKVYTAIAN ALAAIGESDK KRKDKEECQL LAPSSQSANI IGKSGTTIKK LRSKMRANIK VVARDASDPT HSCALEFDNF VLITGDPESV
201: RRSLFAISAI MYKFTPKEEI PLTTNVPEVR PSIIIPSDVP IYPGAGIYPN VDPIMPSRSV PSVLGTTQIP ELPGYVDAGS TWPLYSSGLP MVSGYSGASQ
301: TEELTIRVLC PTNNIGRVIG KGGASIKSVR QTSGARIEVC DAKADRDQCI ITVISTESVD DLKSMAVEAV LLLQGKINDE DEDTVTFRLL VPSKIIGCII
401: GKGGSIINEI RKRTRADVRI SKGERPKCAD SNDELVEVSG EVSSVRDALI QIVLRLRDDV IKGQEGNHNP SAALRAGATG FSLAPVLPNV PPAAPLSFEH
501: RIETGNGVGM RSSGSRYGHE SLSIGEDTYG TFSSYSSKLY GGLPPPSAVE MVIPGHAVGK VMGKGGSNID NIRKISGAAV DIIDSKSSRG DQIAIISGTQ
601: EQKRAAENLI QAFIMAT

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.