CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33460	Canola	nucleus	95.93	95.63
AT5G46190.2	Thale cress	cytosol	80.59	74.75
CDX99470	Canola	nucleus	28.8	67.9
CDX78846	Canola	nucleus	58.53	65.16
CDX99471	Canola	nucleus	20.66	61.4
VIT_10s0003g03860.t01	Wine grape	cytosol, nucleus, plastid	58.22	59.71
KRH42565	Soybean	nucleus	57.59	58.88
KRH58669	Soybean	endoplasmic reticulum, nucleus	56.49	58.13
PGSC0003DMT400076798	Potato	nucleus	54.93	56.61
Solyc08g048500.2.1	Tomato	nucleus	54.62	56.56
GSMUA_Achr6P03670_001	Banana	cytosol, nucleus, plastid	51.64	50.69
GSMUA_Achr9P18150_001	Banana	endoplasmic reticulum, golgi	52.43	48.48
TraesCS3B01G580700.1	Wheat	nucleus	46.32	46.91
TraesCS3A01G512500.1	Wheat	nucleus	46.32	46.91
TraesCS3D01G519700.1	Wheat	nucleus	46.32	46.91
OQU80050	Sorghum	nucleus	46.01	46.74
HORVU0Hr1G007380.3	Barley	mitochondrion, nucleus	46.17	46.68
HORVU5Hr1G121900.1	Barley	nucleus	46.01	46.52
TraesCS4A01G333900.1	Wheat	nucleus	45.7	46.2
TraesCS5B01G551800.1	Wheat	nucleus	45.38	45.96
TraesCS5D01G538200.3	Wheat	nucleus	45.23	45.87
Zm00001d024270_P001	Maize	nucleus	45.07	45.57
Zm00001d049390_P001	Maize	nucleus	43.98	44.53
CDY49107	Canola	nucleus	22.85	30.74
CDX81615	Canola	cytosol	22.07	30.72
CDY03018	Canola	nucleus	22.22	30.34
CDY33769	Canola	nucleus	23.0	30.31
CDY39336	Canola	mitochondrion	22.07	29.81
CDY60930	Canola	nucleus	24.1	28.95
CDX69536	Canola	nucleus	23.94	28.76
CDY45180	Canola	cytosol	18.78	28.37
CDX70604	Canola	nucleus	23.94	26.38
CDX78623	Canola	nucleus	24.26	25.83
CDY51849	Canola	cytosol	4.07	24.53
CDX96185	Canola	nucleus	23.47	23.4
CDY56908	Canola	nucleus	23.16	23.27
CDX84522	Canola	nucleus	26.92	23.21
CDY49453	Canola	nucleus	23.16	23.05
CDY27030	Canola	nucleus	23.79	22.86
CDY52947	Canola	plastid	20.03	22.22
CDY46555	Canola	plastid	20.03	22.03
CDY25609	Canola	cytosol	20.97	21.58
CDX89490	Canola	cytosol	20.81	21.49
CDY13742	Canola	mitochondrion	20.81	21.25
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	20.81	21.08
CDX89376	Canola	cytosol	12.52	18.82
CDY64706	Canola	nucleus	11.89	18.81
CDX74180	Canola	cytosol	16.12	18.29
CDY65294	Canola	cytosol	12.52	18.22
CDY40663	Canola	cytosol	15.81	17.94
CDX92741	Canola	cytosol	13.77	17.85
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	13.3	17.71
CDY42768	Canola	cytosol	13.62	17.65

Protein Annotations

Gene3D:3.30.1370.10	MapMan:35.1	GO:A0A078CR85	EnsemblPlants:CDX77643	ProteinID:CDX77643	ProteinID:CDX77643.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00128582001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF137	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE6ACC	SEG:seg

Description

BnaC07g18970D

Coordinates

chrLK031812:-:365422..369426

Molecular Weight (calculated)

68974.8 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.355

Length

639 amino acids

Sequence
(BLAST)

001: MVERGNKRTH NRTTRDDNNR NQKRRLSHQT EEKLNNKDDL VVYRILCPSG VIGSVIGKSG KVINTIRQET RARIKVVDPF PGCTERVLTI YCTVNDKKDI
101: AEIENSDQIA PLCSAQDALL KLHDAIVASL ATAAENTKIG RDDIRECRLL VPTSQCSNVI GKAGSTVKKV RSRTGANVKI VSKDVSDPSH ACAMDFDNIV
201: SISGGAESVK KALFAVSAIM YKFSPKEQIP LDATVQEAPA SIIIPSDLSI YPQTGLYQSQ DPIFQHGANV PSFIGTLPQG YGETATPVFS SPALPVVHHG
301: TFGGGSSSRQ EELVVKVLCS SSNIGRVIGK GGSTIKGIRQ ASGSRIEVND SRARANHDED CVIIVTSKES PDDLKSMAVE AVLLLQEKIN DEDEEKPKMQ
401: LLVPSKVIGC IIGKSGSIIS EIRKKTNANI YISKENNKCA DLNDELVEIS GEASNVRDAL IQIVLRLRDD VLRDRETTGF RNQQPPARSE KSSFFSSLER
501: SNAAALALTP SFMSSVPQVS PVDFDRRPEG GMSGGLYGYG SFPAGDNSYG SNSSYSSSRY GGLPHPSTTM EIRIPSNAVG KVMGRGGGNL DNIRRISGAM
601: IEISDSESSS HGGRIALISG TPEQKRTAEN LFQAFIMST

Best Arabidopsis Sequence Match ( AT5G46190.3 )
(BLAST)

001: MVERGKRTHN RFRDNNNDNN RNQRRRLSYE SEEKKIDNKD DLVVVYRILC PSGVMGSVIG KSGKVINLIR QETRARIKVV DPFPGCSERV ITIFCSVSEK
101: KDIVDIEYSE LDYSVPLCSA QAALLKVHDA IVASLATAAE NTKIDRDDFR ECRLLVPSSQ CSIVIGKSGS IIKNIRGRTR ANVKVVSKDV SDPSHTCAMD
201: FDNIVMISGE TESVKKALFA VSAIMYKVSP REQIPLDTTV QEVPASIIIP SDLSIYPQAG LYPSQDSIFQ HGANVSSFIG TLPQGYGENA ANPVPVFSAS
301: ALPVVHGFGG SSRSEKLAIK VICSSSKIGR VIGKGGLTIK GIRQASGSHI EVNDSRTNHD DDCVITVTAT ESPDDLKSMA VEAVLLLQEK INDEDEDKVK
401: MQLLVSSKVI GCIIGKSGSI ISEIRKRTKA DIHISKGNNT PKCADPNDEL VEISGEVSNV RDALIQIVLR LRDDVLRDRE TGSRNQPPAR SENNNFFSSS
501: SSNTGLALPQ SFMSSVPQVA SVDFNRRPET GSSMSMLPSS GGIYGYGSFP VGNTSYGSNS SYSSNLYGGL PQSTTMEVRI PANAVGKVMG RGGGNLDNIR
601: RISGAMIEIS DSKNSHGGRV ALISGTSEQK RTAENLFQAF IMST

Arabidopsis Description

RNA-binding KH domain-containing protein [Source:TAIR;Acc:AT5G46190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.