CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33769	Canola	nucleus	98.04	92.78
CDY51849	Canola	cytosol	20.48	88.68
CDY49107	Canola	nucleus	88.45	85.47
CDY39336	Canola	mitochondrion	88.02	85.41
AT1G14170.3	Thale cress	cytosol, mitochondrion, nucleus, plastid	87.36	83.72
CDY03018	Canola	nucleus	73.42	72.01
CDY45180	Canola	cytosol	64.27	69.74
VIT_01s0026g02650.t01	Wine grape	nucleus	61.66	49.48
PGSC0003DMT400047374	Potato	nucleus	55.77	48.03
Solyc05g007810.2.1	Tomato	nucleus	55.56	47.93
GSMUA_Achr7P11520_001	Banana	mitochondrion, nucleus	52.72	45.66
GSMUA_Achr6P10750_001	Banana	nucleus	52.51	45.3
Zm00001d029328_P002	Maize	nucleus	53.16	45.1
KXG39277	Sorghum	nucleus	53.16	45.02
Os03t0376800-02	Rice	nucleus	52.94	44.83
CDY60930	Canola	nucleus	50.76	43.8
CDX69536	Canola	nucleus	50.11	43.23
TraesCS4A01G150800.1	Wheat	nucleus	49.67	42.3
TraesCS4D01G160700.2	Wheat	nucleus	49.89	40.67
TraesCS4B01G166500.2	Wheat	nucleus	49.89	40.67
CDX70604	Canola	nucleus	50.98	40.34
HORVU4Hr1G049680.1	Barley	nucleus	49.89	39.35
CDX78623	Canola	nucleus	50.98	39.0
CDX99471	Canola	nucleus	13.51	28.84
CDX78846	Canola	nucleus	28.1	22.47
CDX77643	Canola	nucleus	30.72	22.07
CDY33460	Canola	nucleus	30.5	21.84
CDY27030	Canola	nucleus	29.19	20.15
CDX96185	Canola	nucleus	28.1	20.12
CDY56908	Canola	nucleus	26.8	19.34
CDY49453	Canola	nucleus	27.02	19.31
CDY46555	Canola	plastid	24.4	19.28
CDY52947	Canola	plastid	23.75	18.92
CDX99470	Canola	nucleus	10.68	18.08
CDY25609	Canola	cytosol	23.09	17.07
CDX84522	Canola	nucleus	27.45	17.0
CDY13742	Canola	mitochondrion	23.09	16.93
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	23.09	16.8
CDY64706	Canola	nucleus	14.38	16.34
CDX89490	Canola	cytosol	22.0	16.32
CDX92741	Canola	cytosol	16.99	15.82
CDX89376	Canola	cytosol	14.6	15.76
CDY42768	Canola	cytosol	16.78	15.62
CDY40663	Canola	cytosol	18.95	15.45
CDX74180	Canola	cytosol	18.95	15.45
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	16.12	15.42
CDY65294	Canola	cytosol	14.38	15.03

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078CXS5	EnsemblPlants:CDX81615	ProteinID:CDX81615
ProteinID:CDX81615.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00136525001
InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013	PFscan:PS50084
PANTHER:PTHR10288	PANTHER:PTHR10288:SF149	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EED733	SEG:seg

Description

BnaC08g39860D

Coordinates

chrLK031826:-:26444..28977

Molecular Weight (calculated)

50451.0 Da

IEP (calculated)

5.502

GRAVY (calculated)

-0.350

Length

459 amino acids

Sequence
(BLAST)

001: MASTLRNIHD HNVIGSEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRITEALPG CEERVVTIYS TSDELNHFGD DGELVCPALD ALFKVHDMVV
101: ADTNDNDDDD DGDEDLVGKQ MVTVRMLVPS DQIGCVIGKG GQVIQKLRTE TNAQIRVIKD NLPPCALTLS HDELLQIIGE PLVVREALYQ VASLLHDNPS
201: RFQHSLLSSP STMYQPGGML MCAPLTGSHR NYTARRDLAD ATEFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSESEEDDSI IFISSKEFYE
301: DQSPTVNAAM RLQERCSEKV GKDTNDSTIS TRLLVSSSHI GCLIGKGGAV ISEMRSVTRA NIRILQKENV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANAFDMNH GLVLLPTSFP YIPQVSESSN RSKYAKRDGS RDQDYSKLSS NSKRRNYVS

Best Arabidopsis Sequence Match ( AT1G14170.1 )
(BLAST)

001: MASTLRNIHD QNVIASEDTV YRYLCPVKKT GSIIGKGGEI AKQIRSETKS NMRINEALPG CEERVVTMYS TNEELNHFGD DGELVCPALD ALFKVHDMVV
101: ADADQDDGTD DDNDLGEKQT VTVRMLVPSD QIGCVIGKGG QVIQNLRNDT NAQIRVIKDH LPACALTLSH DELLLIIGEP LVVREALYQV ASLLHDNPSR
201: FQHLLLSSSS SSMHQPGAML MSAALTSSHR NYAVRRDIAD AREFCVCFIC PAENVGGVIG KGGGFINQIR QETGATIRVN TSETDDDDCI IFISSKEFYE
301: DQSPAVNAAI RLQQRCSEKV GKDANDLAIS TRLLVSSSQI GCLIGKGGAV ISEMRSVTRA NIRILQKEDV PKIAREDEEM VQITGSPDAA MKALTQVILR
401: LRANSFDMDH GLVLLPTSFP YIPQVTESSS KSKYAKRDDH SKLNSNSKRR NHVS

Arabidopsis Description

F7A19.25 protein [Source:UniProtKB/TrEMBL;Acc:Q9XI71]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.