CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76980
CDX81606
CDX95958
CDX96251
CDY01754
CDY24170
CDY28576
CDY28577
CDY35358
CDY36943
CDY50300
CDY68276
CDY69014

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G51580.1	CDX81606	AT1G69170.1	21798944
AT1G51580.1	CDX95958	AT1G69170.1	21798944
AT1G51580.1	CDX96251	AT1G69170.1	21798944
AT1G51580.1	CDY50300	AT1G69170.1	21798944
AT1G51580.1	CDY69014	AT1G69170.1	21798944
AT1G51580.1	CDY01754	AT1G69690.1	21798944
AT1G51580.1	CDY28576	AT1G69690.1	21798944
AT1G51580.1	CDY28577	AT1G69690.1	21798944
AT1G51580.1	CDY68276	AT1G69690.1	21798944
AT1G51580.1	CDX76980	AT2G25490.1	21798944
AT1G51580.1	CDY35358	AT2G25490.1	21798944
AT1G51580.1	CDY24170	AT3G47620.1	21798944
AT1G51580.1	CDY36943	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014290.1-P	Field mustard	plastid	99.66	99.66
CDY52947	Canola	plastid	97.07	97.92
AT1G51580.1	Thale cress	cytosol, plastid	85.37	79.87
Solyc12g055780.1.1	Tomato	cytosol, nucleus	29.26	45.95
KRH44614	Soybean	mitochondrion, nucleus	40.96	42.12
PGSC0003DMT400074198	Potato	plastid	32.19	42.12
KRH47290	Soybean	mitochondrion, nucleus	40.45	42.04
VIT_09s0054g00450.t01	Wine grape	plastid	48.88	40.34
GSMUA_Achr10P...	Banana	nucleus	38.73	33.38
Os09t0498600-01	Rice	plastid	34.94	32.95
Solyc12g055790.1.1	Tomato	nucleus	13.43	31.33
KXG35952	Sorghum	plastid	33.39	31.19
TraesCS5D01G284200.4	Wheat	plastid	33.39	30.94
TraesCS5A01G276800.5	Wheat	plastid	33.39	30.94
TraesCS5B01G276400.1	Wheat	plastid	33.22	30.88
Zm00001d006055_P002	Maize	plastid	32.19	29.97
HORVU5Hr1G075110.3	Barley	mitochondrion	32.7	29.5
CDX99471	Canola	nucleus	9.81	26.51
CDY13742	Canola	mitochondrion	27.71	25.72
CDX76904	Canola	mitochondrion, nucleus, peroxisome, plastid	27.37	25.2
CDX69536	Canola	nucleus	22.89	25.0
CDY60930	Canola	nucleus	22.55	24.62
CDX81615	Canola	cytosol	19.28	24.4
CDX89490	Canola	cytosol	25.65	24.07
CDY25609	Canola	cytosol	25.65	23.99
CDY33769	Canola	nucleus	19.62	23.51
CDX84522	Canola	nucleus	29.09	22.81
CDY49107	Canola	nucleus	18.59	22.74
CDX78846	Canola	nucleus	22.2	22.47
CDY39336	Canola	mitochondrion	18.07	22.2
CDX70604	Canola	nucleus	22.03	22.07
CDY03018	Canola	nucleus	17.73	22.01
CDX99470	Canola	nucleus	10.15	21.77
CDY45180	Canola	cytosol	15.32	21.04
CDX78623	Canola	nucleus	21.51	20.83
CDY33460	Canola	nucleus	22.38	20.28
CDX96185	Canola	nucleus	22.38	20.28
CDX77643	Canola	nucleus	22.03	20.03
CDY27030	Canola	nucleus	22.89	20.0
CDY56908	Canola	nucleus	21.86	19.97
CDY49453	Canola	nucleus	22.03	19.94
CDY51849	Canola	cytosol	2.93	16.04
CDX89376	Canola	cytosol	11.7	16.0
CDY49999	Canola	cytosol, endoplasmic reticulum, nucleus	12.91	15.62
CDY64706	Canola	nucleus	10.84	15.59
CDY65294	Canola	cytosol	11.36	15.03
CDX92741	Canola	cytosol	12.56	14.81
CDY42768	Canola	cytosol	12.56	14.81
CDX74180	Canola	cytosol	13.6	14.03
CDY40663	Canola	cytosol	13.6	14.03

Protein Annotations

Gene3D:3.30.1370.10	Gene3D:3.30.310.210	MapMan:35.1	GO:A0A078I6N8	UniProt:A0A078I6N8	EnsemblPlants:CDY46555
ProteinID:CDY46555	ProteinID:CDY46555.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
EnsemblPlantsGene:GSBRNA2T00085773001	InterPro:IPR036612	InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	PFAM:PF00013
PFscan:PS50084	PANTHER:PTHR10288	PANTHER:PTHR10288:SF174	SMART:SM00322	SUPFAM:SSF54791	UniParc:UPI0004EE82CA
SEG:seg	:	:	:	:	:

Description

BnaA08g01940DBnaA08g01940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6N8]

Coordinates

chrLK032675:-:116971..119280

Molecular Weight (calculated)

62599.2 Da

IEP (calculated)

5.543

GRAVY (calculated)

-0.343

Length

581 amino acids

Sequence
(BLAST)

001: MDFSSSKRPA TASAESVQFR LLCPASRTGA IIGKGGSVIR HLQSLTGSKI RVIDDIPVPS EERVVLITAP NATKKDDSSN ACDPENPSSD QTKPPETAAA
101: DKPGEEAPPP PSSSALVRVL ERIVFGDDAA NGDGSELDKG EFEGLCRVLV RGNQVDYLMS QGGMMMQRIR DESGASVRIA STDQIPPCAF PGDVVIQING
201: KFSSVKKALL MITSSLQESG APPTWEECSF PPPGYPPDYH SMEYHQWDHP PNPMAEDVGP FNRPPIVEEE VAFRLLCPAD KVGSLIGKGG AVVRALQNET
301: GASIKVSDPT HETEERIVVI SARENLERRH SLAQDAVMCV HNRIVEIGFE PSAAVVARLL VHSPFIGHQA TKYESQHDEI VQIIGNVKTV QDALFQITSR
401: LREAMFPGRI PFPGMGGPPP PFMGPYPEPP PPFGPRPYPA SPDRYHSPVG PYHERHCHGP GFDRPPSPMS WTPQPPIDGH PGGMVPDVNH GFALRNEPIG
501: GENLPMTSAN VEIVVPQAYL GHVYGENCSN LNYIKQVTGA NVVVHDPKAG TTEGLVVVSG TSDQAHFAQS LLHAFILCGQ S

Best Arabidopsis Sequence Match ( AT1G51580.1 )
(BLAST)

001: MEFSTSKRPA TTATAAESVH FRLLCPATRT GAIIGKGGSV IRHLQSVTGS KIRVIDDIPV PSEERVVLII APSGKKKDES NVCDSENPGS EEPKQEKGSE
101: CAGTSGGDDE EAPSSAQMAL LRVFERIVFG DDAATVDGDE LDKGESEGLC RMIVRGNQVD YLMSKGGKMI QKIREDSGAI VRISSTDQIP PCAFPGDVVI
201: QMNGKFSSVK KALLLVTNCL QESGAPPTWD ECPFPQPGYP PEYHSMEYHP QWDHPPPNPM PEDVGPFNRP VVEEEVAFRL LCPADKVGSL IGKGGAVVRA
301: LQNESGASIK VSDPTHDSEE RIIVISAREN LERRHSLAQD GVMRVHNRIV EIGFEPSAAV VARLLVHSPY IGRLLGKGGH LISEMRRATG ASIRVFAKDQ
401: ATKYESQHDE IVQVIGNLKT VQDALFQILC RLREAMFPGR LPFQGMGGPP PPFMGPYPEP PPPFGPRQYP ASPDRYHSPV GPFHERHCHG PGFDRPPGPG
501: FDRPPSPMSW TPQPGIDGHP GGMVPPDVNH GFALRNEPIG SENPVMTSAN VEIVIPQAYL GHVYGENCSN LNYIKQVSGA NVVVHDPKAG TTEGLVVVSG
601: TSDQAHFAQS LLHAFILCGQ S

Arabidopsis Description

At1g51580 [Source:UniProtKB/TrEMBL;Acc:Q9C553]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.