Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY28577 | Canola | cytosol | 76.42 | 100.0 |
| Bra007875.1-P | Field mustard | cytosol | 75.47 | 97.56 |
| CDY68276 | Canola | nucleus, plastid | 89.62 | 88.78 |
| CDY01754 | Canola | nucleus, plastid | 89.94 | 88.54 |
| AT1G69690.1 | Thale cress | nucleus, plastid | 86.79 | 84.92 |
| CDY36943 | Canola | nucleus | 28.3 | 47.62 |
| VIT_01s0026g02200.t01 | Wine grape | nucleus | 50.63 | 45.61 |
| CDY24170 | Canola | nucleus | 32.7 | 42.8 |
| KRH45889 | Soybean | nucleus | 37.74 | 41.96 |
| KRG99108 | Soybean | nucleus | 35.22 | 41.03 |
| CDY40752 | Canola | cytosol | 22.33 | 40.11 |
| CDX78335 | Canola | nucleus | 21.38 | 38.64 |
| CDX81094 | Canola | nucleus | 21.38 | 37.78 |
| CDY16842 | Canola | nucleus | 25.16 | 37.21 |
| CDX87179 | Canola | nucleus | 25.16 | 37.21 |
| CDY44770 | Canola | cytosol | 24.84 | 35.11 |
| CDY60249 | Canola | cytosol | 22.96 | 35.1 |
| CDY46951 | Canola | nucleus | 24.53 | 33.91 |
| PGSC0003DMT400008728 | Potato | nucleus | 38.36 | 32.88 |
| CDY45760 | Canola | nucleus | 24.84 | 32.64 |
| Solyc05g007420.1.1 | Tomato | nucleus | 39.31 | 32.64 |
| CDY40799 | Canola | nucleus | 23.58 | 32.61 |
| CDY21536 | Canola | nucleus | 23.9 | 32.2 |
| CDY20065 | Canola | cytosol | 27.04 | 31.97 |
| CDY48964 | Canola | nucleus | 22.01 | 31.82 |
| CDX88010 | Canola | nucleus | 25.16 | 31.62 |
| CDY52403 | Canola | nucleus | 28.62 | 29.84 |
| CDY00171 | Canola | nucleus | 25.79 | 29.71 |
| CDY13675 | Canola | nucleus | 28.93 | 29.58 |
| CDY27099 | Canola | nucleus | 25.16 | 28.67 |
| CDX72856 | Canola | nucleus | 29.87 | 28.44 |
| CDX95656 | Canola | nucleus | 26.1 | 28.33 |
| CDX96370 | Canola | nucleus | 29.56 | 28.06 |
| CDY39914 | Canola | nucleus, plastid | 34.28 | 27.66 |
| CDY71135 | Canola | nucleus | 33.96 | 27.55 |
| CDX91612 | Canola | nucleus | 24.84 | 27.43 |
| CDY53888 | Canola | nucleus | 26.73 | 27.33 |
| CDX74756 | Canola | nucleus | 27.04 | 26.46 |
| CDY18910 | Canola | nucleus | 26.73 | 26.15 |
| CDX82193 | Canola | nucleus, plastid | 28.93 | 26.14 |
| CDY03666 | Canola | nucleus, plastid | 28.93 | 25.92 |
Protein Annotations
| MapMan:15.5.19 | UniProt:A0A078GSU9 | EnsemblPlants:CDY28576 | ProteinID:CDY28576 | ProteinID:CDY28576.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00040546001 | InterPro:IPR017887 | PFAM:PF03634 | PFscan:PS51369 |
| PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP | UniParc:UPI0004EEED40 | SEG:seg |
Description
BnaC02g19450DBnaC02g19450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSU9]
Coordinates
chrLK032222:+:471070..472026
Molecular Weight (calculated)
33773.8 Da
IEP (calculated)
7.706
GRAVY (calculated)
-0.693
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPDPDHNPN HHRPNFPLQL LDSSSYSSTS LAIIPSASSS EPNSDPNALS KKPPPKRTST KDRHTKVEGR GRRIRMPAMC AARVFQLTRE LGHKSDGETI
101: EWLLQQAEPA VIAATGTGTI PANFASLNIS LRSSRSSLSA AHLRTAPGSY YFHSPTMAHP HQVRPKHESH SSSSSQLLDH NQMGNYLVQS TAGSLPTSQT
201: PTTAPFWSSG DSTQNLWAFN INPHHSGEVY NTSGGGGGGG GAGGGGVHLM NFAAPIALFS GQPLASGYGG GGGDHNHYGV LAALNAAYRP VQETASQQNR
301: EGDHHYSHQE DGSTSHHS
101: EWLLQQAEPA VIAATGTGTI PANFASLNIS LRSSRSSLSA AHLRTAPGSY YFHSPTMAHP HQVRPKHESH SSSSSQLLDH NQMGNYLVQS TAGSLPTSQT
201: PTTAPFWSSG DSTQNLWAFN INPHHSGEVY NTSGGGGGGG GAGGGGVHLM NFAAPIALFS GQPLASGYGG GGGDHNHYGV LAALNAAYRP VQETASQQNR
301: EGDHHYSHQE DGSTSHHS
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.