CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70068
CDX70866
CDX71689
CDX88899
CDX98955
CDY02580
CDY07161
CDY32642
CDY38850
CDY39879
CDY47201
CDY48492
CDY59013
CDY59025
CDY66931

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	CDY39879	AT2G25000.1	21798944
AT4G22720.1	CDY07161	AT4G00980.1	21798944
AT4G22720.1	CDY48492	AT4G00980.1	21798944
AT4G22720.1	CDX70068	AT5G06780.1	21798944
AT4G22720.1	CDX98955	AT5G06780.1	21798944
AT4G22720.1	CDX70866	AT5G19150.1	21798944
AT4G22720.1	CDX88899	AT5G19150.1	21798944
AT4G22720.1	CDY02580	AT5G19150.1	21798944
AT4G22720.1	CDY47201	AT5G19150.1	21798944
AT4G22720.1	CDY59013	AT5G19150.1	21798944
AT4G22720.1	CDY59025	AT5G19150.1	21798944
AT4G22720.1	CDY66931	AT5G19150.1	21798944
AT4G22720.1	CDX71689	AT5G51110.1	21798944
AT4G22720.1	CDY32642	AT5G51110.1	21798944
AT4G22720.1	CDY38850	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2082g00010.t01	Wine grape	cytosol	64.75	59.6
AT4G22720.1	Thale cress	cytosol	74.82	29.46
CDX82960	Canola	cytosol, mitochondrion	74.82	29.46
KRG97103	Soybean	cytosol	66.91	26.42
CDX79172	Canola	cytosol	79.86	26.24
KRH03601	Soybean	cytosol	65.47	25.85
Solyc02g068750.1.1	Tomato	cytosol	64.03	25.72
PGSC0003DMT400027091	Potato	cytosol	64.03	25.72
GSMUA_Achr7P10790_001	Banana	cytosol	64.03	25.65
TraesCS1D01G130800.1	Wheat	plastid	69.78	25.46
TraesCS1B01G143400.1	Wheat	plastid	69.06	25.2
TraesCS1A01G123600.1	Wheat	plastid	69.06	25.2
OQU77586	Sorghum	plastid	66.91	24.41
Zm00001d037675_P001	Maize	extracellular	66.19	24.15
HORVU1Hr1G028330.1	Barley	cytosol, extracellular, mitochondrion, plastid	67.63	21.81
GSMUA_Achr10P...	Banana	cytosol	54.68	17.08
CDY18936	Canola	mitochondrion, plastid	19.42	5.65
CDX74720	Canola	mitochondrion, plastid	19.42	5.64
CDY20454	Canola	mitochondrion	11.51	5.26
Bra020834.1-P	Field mustard	nucleus	0.72	1.02

Protein Annotations

KEGG:00564+2.3.1.23	Gene3D:3.30.420.40	MapMan:35.2	UniProt:A0A078JP14	EnsemblPlants:CDY67122	ProteinID:CDY67122
ProteinID:CDY67122.1	GO:GO:0000408	GO:GO:0002949	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00059589001	InterPro:Gcp-like_dom
InterPro:Kae1/OSGEP	PFAM:PF00814	PANTHER:PTHR11735	PANTHER:PTHR11735:SF14	MetaCyc:PWY-5353	MetaCyc:PWY-5368
MetaCyc:PWY-5995	MetaCyc:PWY-6433	MetaCyc:PWY-6803	MetaCyc:PWY-6958	MetaCyc:PWY-7409	MetaCyc:PWY-7416
MetaCyc:PWY-7470	MetaCyc:PWY-7618	UniParc:UPI0004EE84B0	:	:	:

Description

BnaCnng53680DBnaCnng53680D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JP14]

Coordinates

chrLK035785:+:10232..10651

Molecular Weight (calculated)

16054.4 Da

IEP (calculated)

4.704

GRAVY (calculated)

-0.183

Length

139 amino acids

Sequence
(BLAST)

001: MRDTLVYDLL VLPETLFAML VEITERAMAH YDKKDVLIVG GVGCNERLQD MMRTMCSERD GRLFATDDRY CIDNGAMIAY TGLLEFVNGI ETPLEDSTFT
101: QRFRTDEVHA VWREKEDMVR GDKNVAAAKR LCVLNFYRL

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.