CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74720	Canola	mitochondrion, plastid	86.84	55.11
Bra004895.1-P	Field mustard	mitochondrion	86.18	54.7
CDY18936	Canola	mitochondrion, plastid	85.53	54.39
AT2G45270.1	Thale cress	plastid	81.91	51.88
GSMUA_Achr10P...	Banana	plastid	49.34	50.17
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	68.09	45.7
VIT_15s0048g00390.t01	Wine grape	mitochondrion	69.41	45.09
PGSC0003DMT400018067	Potato	mitochondrion, plastid	68.09	44.14
Os12t0485000-02	Rice	plastid	65.79	43.38
HORVU3Hr1G029020.4	Barley	plastid	65.13	43.04
TraesCS3D01G149500.1	Wheat	plastid	64.8	42.92
TraesCS3A01G133300.1	Wheat	plastid	64.47	42.7
TraesCS3B01G166200.1	Wheat	plastid	64.47	42.7
OQU86762	Sorghum	plastid	65.79	42.64
TraesCS5A01G076800.1	Wheat	plastid	64.14	42.39
TraesCS5B01G082600.1	Wheat	plastid	63.82	42.17
KRH76215	Soybean	cytosol	44.74	41.98
TraesCS5B01G083500.1	Wheat	plastid	63.49	41.96
TraesCS5D01G090000.1	Wheat	plastid	63.82	40.33
Zm00001d040583_P001	Maize	cytosol, plastid	43.42	37.71
Zm00001d040582_P002	Maize	plastid	25.0	36.02
Os01t0295900-01	Rice	mitochondrion	22.7	35.03
CDX82960	Canola	cytosol, mitochondrion	22.04	18.98
CDX79172	Canola	cytosol	22.04	15.84
CDY67122	Canola	endoplasmic reticulum, extracellular	5.26	11.51

Protein Annotations

KEGG:00564+2.3.1.23	MapMan:16.6.2.3	Gene3D:3.30.420.40	UniProt:A0A078G503	EnsemblPlants:CDY20454	ProteinID:CDY20454
ProteinID:CDY20454.1	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0006139
GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00012540001	InterPro:Gcp-like_dom	InterPro:KAE1/TsaD	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735
PANTHER:PTHR11735:SF6	MetaCyc:PWY-5353	MetaCyc:PWY-5368	MetaCyc:PWY-5995	MetaCyc:PWY-6433	MetaCyc:PWY-6803
MetaCyc:PWY-6958	MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470	MetaCyc:PWY-7618	SUPFAM:SSF53067
TIGRFAMs:TIGR00329	InterPro:TsaD	UniParc:UPI0004EF0DCD	:	:	:

Description

BnaC04g05900DBnaC04g05900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G503]

Coordinates

chrLK032108:+:228710..230483

Molecular Weight (calculated)

33324.5 Da

IEP (calculated)

8.916

GRAVY (calculated)

-0.060

Length

304 amino acids

Sequence
(BLAST)

001: MFTRLNNNHQ KTLAQLLEQY GGVAPKQAEE AHSRVIDKVV QDALDRANLT ETDLSAVAVT IGPGLGLCLR VGVHKARRVA GAFNLPIVGV HHMEAHALVA
101: RLVEHELSFP FMALLISGGH NIIVLAHKLG QYTQLGTTVD DAIGEAFDKT AKGLGLDLRR SGGPAVEELA LEGDSKSVMF NVPMKNHKDC NFSYAGLKTL
201: VRLAIAAREI DAKCPFSSAT KEDRRNRADI AASFQRVTVL HLEEKCERAI DLAMKLEPSI KHMVVPGGVA SNQYVRFRLN NIVENKNLKL TIRSQDVLSQ
301: VVLW

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.