CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20454	Canola	mitochondrion	41.98	44.74
KRH65326	Soybean	plastid	57.41	41.8
Zm00001d040583_P001	Maize	cytosol, plastid	40.12	37.14
CDY18936	Canola	mitochondrion, plastid	47.84	32.43
OQU86762	Sorghum	plastid	46.91	32.41
Os12t0485000-02	Rice	plastid	45.99	32.32
TraesCS3D01G149500.1	Wheat	plastid	45.68	32.24
TraesCS3B01G166200.1	Wheat	plastid	45.68	32.24
Bra004895.1-P	Field mustard	mitochondrion	47.53	32.15
CDX74720	Canola	mitochondrion, plastid	47.53	32.15
TraesCS3A01G133300.1	Wheat	plastid	45.37	32.03
HORVU3Hr1G029020.4	Barley	plastid	45.37	31.96
AT2G45270.1	Thale cress	plastid	47.22	31.88
TraesCS5A01G076800.1	Wheat	plastid	45.06	31.74
TraesCS5B01G082600.1	Wheat	plastid	44.75	31.52
TraesCS5B01G083500.1	Wheat	plastid	44.75	31.52
TraesCS5D01G090000.1	Wheat	plastid	44.14	29.73
GSMUA_Achr10P...	Banana	plastid	25.93	28.09
KRH03601	Soybean	cytosol	13.89	12.78
KRG97103	Soybean	cytosol	13.58	12.5
Os01t0295900-01	Rice	mitochondrion	3.09	5.08
Zm00001d040582_P002	Maize	plastid	2.78	4.27
KRH65783	Soybean	nucleus	0.62	1.05

Protein Annotations

MapMan:16.6.2.3	Gene3D:3.30.420.40	UniProt:A0A0R0LAM0	EMBL:ACUP02000582	EnsemblPlantsGene:GLYMA_01G140000	GO:GO:0000003
GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006508
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	InterPro:Gcp-like_dom	InterPro:KAE1/TsaD
EnsemblPlants:KRH76215	ProteinID:KRH76215	ProteinID:KRH76215.1	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735
PANTHER:PTHR11735:SF6	MetaCyc:PWY-5353	MetaCyc:PWY-5368	MetaCyc:PWY-5995	MetaCyc:PWY-6433	MetaCyc:PWY-6803
MetaCyc:PWY-6958	MetaCyc:PWY-7053	MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470	MetaCyc:PWY-7618
SUPFAM:SSF53067	InterPro:TsaD	UniParc:UPI0006EDD7D4	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:46801922..46805707

Molecular Weight (calculated)

37012.6 Da

IEP (calculated)

8.199

GRAVY (calculated)

-0.213

Length

324 amino acids

Sequence
(BLAST)

001: MEAHALVARL IEKDLQFPFM ALLISGGHNV LVLARDLGQY IQLGTTIDNA IGEAYDKTAK WLGLDLRRSG GPAIEKLAME GNAESVKFSL VIVALDCNFS
101: YAGLKTQVRL EIESKMIDAK IPISSASNED RLSRADIAAS FQHVLYNYYL FHFLHVKQRI AVLHLEERCE RAILWAFKME PSIRHLVVSG GVASNQYVRA
201: RLHYGQGFWI QRGLTWKVGN GAKIKFWEDV WSYGDTPLLA KYPRLYLISD QQNKNIQEMG QQTDNGSTKK DEWIWKPEPS GQYSVRTAYN MLKGVDVEED
301: NMWVFEELWK IRVPPKLLFL HGGY

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.