CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040582_P002	Maize	plastid	31.05	27.96
Os01t0295900-01	Rice	mitochondrion	26.84	25.89
GSMUA_Achr10P...	Banana	plastid	31.05	19.73
KRH65326	Soybean	plastid	37.89	16.18
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	32.63	13.69
PGSC0003DMT400018067	Potato	mitochondrion, plastid	33.68	13.65
VIT_15s0048g00390.t01	Wine grape	mitochondrion	33.16	13.46
OQU86762	Sorghum	plastid	33.16	13.43
TraesCS5B01G082600.1	Wheat	plastid	32.11	13.26
TraesCS3B01G166200.1	Wheat	plastid	31.58	13.07
TraesCS3D01G149500.1	Wheat	plastid	31.58	13.07
HORVU3Hr1G029020.4	Barley	plastid	31.58	13.04
TraesCS5B01G083500.1	Wheat	plastid	31.58	13.04
TraesCS5A01G076800.1	Wheat	plastid	31.58	13.04
TraesCS3A01G133300.1	Wheat	plastid	30.53	12.64
TraesCS5D01G090000.1	Wheat	plastid	31.58	12.47
Os12t0485000-02	Rice	plastid	29.47	12.15
KRH03601	Soybean	cytosol	9.47	5.11
KRG97103	Soybean	cytosol	9.47	5.11
Zm00001d040583_P001	Maize	cytosol, plastid	6.32	3.43
KRH76215	Soybean	cytosol	1.05	0.62

Protein Annotations

Gene3D:3.30.420.40	MapMan:35.1	UniProt:A0A0R0KFB8	EMBL:ACUP02001536	EnsemblPlantsGene:GLYMA_03G061000	GO:GO:0000003
GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006508
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0019538	InterPro:Gcp-like_dom	EnsemblPlants:KRH65783
ProteinID:KRH65783	ProteinID:KRH65783.1	PFAM:PF00814	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6	MetaCyc:PWY-5353
MetaCyc:PWY-5368	MetaCyc:PWY-5995	MetaCyc:PWY-6433	MetaCyc:PWY-6803	MetaCyc:PWY-6958	MetaCyc:PWY-7053
MetaCyc:PWY-7409	MetaCyc:PWY-7416	MetaCyc:PWY-7470	MetaCyc:PWY-7618	SUPFAM:SSF53067	InterPro:TsaD
UniParc:UPI0006ED84C5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:9049358..9051509

Molecular Weight (calculated)

21234.4 Da

IEP (calculated)

10.655

GRAVY (calculated)

-1.114

Length

190 amino acids

Sequence
(BLAST)

001: MGTSEFNHDT WKEKERELVF YLKGTNVEQG KHKSISMKSK TIKPGKHQRG NNRGERETKS NKTKSSKQQR GKRRREKCKQ QHGADKKTQE RKKGLPAKGE
101: TEAASSNGGS LAMRRRRAET ADLLAKHGGV APKMAEEAHS KVIDQVVQDA LDKAYLTEKD LTAVAVTIGP GLSLCLRVEV QKAPENCWQI

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.