Factsheet for Solyc05g050940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018067	Potato	mitochondrion, plastid	96.03	92.75
KRH65326	Soybean	plastid	71.52	72.81
VIT_15s0048g00390.t01	Wine grape	mitochondrion	73.73	71.37
AT2G45270.1	Thale cress	plastid	73.29	69.17
CDY20454	Canola	mitochondrion	45.7	68.09
CDY18936	Canola	mitochondrion, plastid	71.3	67.57
CDX74720	Canola	mitochondrion, plastid	71.08	67.22
Bra004895.1-P	Field mustard	mitochondrion	70.64	66.81
OQU86762	Sorghum	plastid	66.23	63.97
GSMUA_Achr10P...	Banana	plastid	41.72	63.21
Os12t0485000-02	Rice	plastid	63.58	62.47
TraesCS3A01G133300.1	Wheat	plastid	63.13	62.31
HORVU3Hr1G029020.4	Barley	plastid	63.13	62.17
TraesCS3B01G166200.1	Wheat	plastid	62.91	62.09
TraesCS3D01G149500.1	Wheat	plastid	62.91	62.09
TraesCS5B01G082600.1	Wheat	plastid	61.81	60.87
TraesCS5B01G083500.1	Wheat	plastid	61.59	60.65
TraesCS5A01G076800.1	Wheat	plastid	61.37	60.43
TraesCS5D01G090000.1	Wheat	plastid	61.37	57.8
Zm00001d040583_P001	Maize	cytosol, plastid	43.05	55.71
Zm00001d040582_P002	Maize	plastid	24.72	53.08
Os01t0295900-01	Rice	mitochondrion	21.63	49.75
KRH65783	Soybean	nucleus	13.69	32.63
Solyc02g068750.1.1	Tomato	cytosol	19.21	25.14

Protein Annotations

MapMan:16.6.2.3	Gene3D:3.30.420.40	GO:GO:0000408	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824
GO:GO:0004222	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006508	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0016787	GO:GO:0019538
GO:GO:0046872	GO:GO:0061711	InterPro:Gcp-like_dom	UniProt:K4C1C6	InterPro:KAE1/TsaD	HAMAP:MF_01445
PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6	SUPFAM:SSF53067	EnsemblPlantsGene:Solyc05g050940.2
EnsemblPlants:Solyc05g050940.2.1	TIGRFAMs:TIGR00329	TIGRFAMs:TIGR03723	InterPro:TsaD	UniParc:UPI000276741E	SEG:seg

Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:Projected from Arabidopsis thaliana (AT2G45270) UniProtKB/Swiss-Prot;Acc:O22145]

Coordinates

chr5:+:61165976..61173214

Molecular Weight (calculated)

49682.0 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.125

Length

453 amino acids

Sequence
(BLAST)

001: MVSLLPNLSS PISRLSLLWR PSIHLTRKLQ LQLQLHQKTV KPKWFKSFSA HCSNSISNEN LVVLGIETSC DDTAAAVVNS NGEILSQVIS SQAELLARYG
101: GVAPKMAEEA HALVIDQVVQ EALDKANLTE KDLTAVAVTI GPGLSLCLRI GVRKARSVAS SHNLPLVGVH HMEAHTLVAR LVDRELHFPF MALLVSGGHN
201: LLILARDLGD YIQLGTTIDD AIGEAYDKTA KWLGLDLRRS GGPAVEELAQ EGDAKSVKFK VPMKQHKDCN FSYAGLKTQV RLAIEAKRIN AEISLASASD
301: EERQARADIA ASFQRVAVLH LEEKCERAIE WGLNIEPSIN HLVVSGGVAS NKYVRARLEE VVKWKGLKLV CPPPSLCTDN GVMVAWTGLE HFRLGRFDPP
401: PPANEPEDAV LDLRPRWPLG EEYAEGKSEA RSMRTARMHP SLTSLIKASI KQE

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.