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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 1
  • golgi 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:vacuole
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY18936 Canola mitochondrion, plastid 82.92 83.26
CDX74720 Canola mitochondrion, plastid 82.5 82.67
CDY20454 Canola mitochondrion 51.88 81.91
Bra004895.1-P Field mustard mitochondrion 81.46 81.63
Solyc05g050940.2.1 Tomato mitochondrion, plastid 69.17 73.29
PGSC0003DMT400018067 Potato mitochondrion, plastid 69.58 71.22
VIT_15s0048g00390.t01 Wine grape mitochondrion 68.33 70.09
Os12t0485000-02 Rice plastid 61.88 64.43
OQU86762 Sorghum plastid 62.29 63.75
GSMUA_Achr10P... Banana plastid 39.17 62.88
HORVU3Hr1G029020.4 Barley plastid 60.21 62.83
TraesCS3A01G133300.1 Wheat plastid 60.0 62.75
TraesCS3B01G166200.1 Wheat plastid 60.0 62.75
TraesCS3D01G149500.1 Wheat plastid 60.0 62.75
TraesCS5B01G082600.1 Wheat plastid 59.58 62.17
TraesCS5B01G083500.1 Wheat plastid 59.38 61.96
TraesCS5A01G076800.1 Wheat plastid 59.17 61.74
TraesCS5D01G090000.1 Wheat plastid 59.17 59.04
Zm00001d040583_P001 Maize cytosol, plastid 41.25 56.57
Zm00001d040582_P002 Maize plastid 22.92 52.13
Os01t0295900-01 Rice mitochondrion 21.04 51.27
KRH76215 Soybean cytosol 31.88 47.22
AT4G22720.1 Thale cress cytosol 17.08 23.23
Protein Annotations
MapMan:16.6.2.3Gene3D:3.30.420.40EntrezGene:819135ProteinID:AAB82636.2ProteinID:AEC10532.1ArrayExpress:AT2G45270
EnsemblPlantsGene:AT2G45270RefSeq:AT2G45270TAIR:AT2G45270RefSeq:AT2G45270-TAIR-GEnsemblPlants:AT2G45270.1TAIR:AT2G45270.1
EMBL:AY024338EMBL:AY063864EMBL:AY117283Unigene:At.27172Symbol:GCP1GO:GO:0000003
GO:GO:0000408GO:GO:0002949GO:GO:0003674GO:GO:0003824GO:GO:0004222GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0005743
GO:GO:0006139GO:GO:0006508GO:GO:0007275GO:GO:0008033GO:GO:0008150GO:GO:0008152
GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009987GO:GO:0016020GO:GO:0016740
GO:GO:0016746GO:GO:0016747GO:GO:0016787GO:GO:0019538GO:GO:0046872GO:GO:0061711
InterPro:Gcp-like_domInterPro:KAE1/TsaDHAMAP:MF_01445RefSeq:NP_566039.1UniProt:O22145PFAM:PF00814
PO:PO:0000013PO:PO:0000037PO:PO:0000293PO:PO:0001054PO:PO:0007064PO:PO:0007098
PO:PO:0007103PO:PO:0007115PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009006
PO:PO:0009025PO:PO:0009029PO:PO:0009031PO:PO:0009047PO:PO:0020030PO:PO:0020038
PO:PO:0025022PRINTS:PR00789PANTHER:PTHR11735PANTHER:PTHR11735:SF6SUPFAM:SSF53067TIGRFAMs:TIGR00329
TIGRFAMs:TIGR03723InterPro:TsaDUniParc:UPI000009EBEFSEG:seg::
Description
GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
Coordinates
chr2:+:18666409..18669873
Molecular Weight (calculated)
52998.6 Da
IEP (calculated)
8.462
GRAVY (calculated)
-0.234
Length
480 amino acids
Sequence
(BLAST)
001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.