Factsheet for TraesCS5D01G090000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G082600.1	Wheat	plastid	92.52	96.74
TraesCS5A01G076800.1	Wheat	plastid	91.27	95.43
TraesCS5B01G083500.1	Wheat	plastid	90.44	94.57
TraesCS3D01G149500.1	Wheat	plastid	88.77	93.03
Os12t0485000-02	Rice	plastid	78.59	82.0
OQU86762	Sorghum	plastid	78.17	80.17
KRH65326	Soybean	plastid	61.12	66.07
Zm00001d040583_P001	Maize	cytosol, plastid	47.82	65.71
CDY20454	Canola	mitochondrion	40.33	63.82
GSMUA_Achr10P...	Banana	plastid	39.29	63.21
VIT_15s0048g00390.t01	Wine grape	mitochondrion	60.29	61.97
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	57.8	61.37
CDX74720	Canola	mitochondrion, plastid	60.29	60.54
CDY18936	Canola	mitochondrion, plastid	60.08	60.46
Bra004895.1-P	Field mustard	mitochondrion	59.88	60.13
PGSC0003DMT400018067	Potato	mitochondrion, plastid	58.0	59.49
AT2G45270.1	Thale cress	plastid	59.04	59.17
Os01t0295900-01	Rice	mitochondrion	24.12	58.88
KRH76215	Soybean	cytosol	29.73	44.14
KRH65783	Soybean	nucleus	12.47	31.58
TraesCS1D01G130800.1	Wheat	plastid	18.92	23.88

Protein Annotations

MapMan:16.6.2.3	Gene3D:3.30.420.40	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0004222
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	InterPro:Gcp-like_dom
InterPro:KAE1/TsaD	HAMAP:MF_01445	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6
SUPFAM:SSF53067	TIGRFAMs:TIGR00329	TIGRFAMs:TIGR03723	EnsemblPlantsGene:TraesCS5D01G090000	EnsemblPlants:TraesCS5D01G090000.1	InterPro:TsaD
TIGR:cd00012	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:97262326..97273756

Molecular Weight (calculated)

51870.4 Da

IEP (calculated)

6.792

GRAVY (calculated)

-0.068

Length

481 amino acids

Sequence
(BLAST)

001: MHLIVLPAEA AGSPAGTPPG KMASTLLPTL LPPVSRAAAF LLRTPPKPFR YHHSLFRSLL ASASSPSTSP TPRALVTMAC AAVPTRRDLL MLGIETSCDD
101: TAAAVVRGDG EILSQAIASQ SDLLVKWGGV APKMAEEAHA LAIDQVVQKA LDDANVSESD LSAVAVTIGP GLSLCLRVGV HKARKIAKVF GLPIVGVHHM
201: EAHALVSRLV NKDLDYPFLA LLISGGHNLL VLAQNLGEYV QLGTTIDDAI GEAYDKSARW LGLDIQKGGG PALEELALEG DPNSINFTVP MRQHKDCNFS
301: YAGLKTPVRL AIESRNLCTD DIPISSATEE DRQLRANIAA SFQRIAVLHL EDRCQRAVEW ALKMRPSIKN FVVSGGVASN QYVRTRLNHI AEKNGLQLVS
401: PPPSLCTDNG VMIAWTGIEH FVPGRFEDPP PADEPDDMQY DLRPRWPLGE EYSEGRSVSR SLKTARIHPS LTSMTQSSLH N

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.