Factsheet for PGSC0003DMT400018067

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	92.75	96.03
KRH65326	Soybean	plastid	69.51	73.26
VIT_15s0048g00390.t01	Wine grape	mitochondrion	72.28	72.44
AT2G45270.1	Thale cress	plastid	71.22	69.58
CDY18936	Canola	mitochondrion, plastid	69.51	68.2
CDY20454	Canola	mitochondrion	44.14	68.09
CDX74720	Canola	mitochondrion, plastid	69.08	67.64
Bra004895.1-P	Field mustard	mitochondrion	68.66	67.22
GSMUA_Achr10P...	Banana	plastid	40.94	64.21
OQU86762	Sorghum	plastid	64.18	64.18
Os12t0485000-02	Rice	plastid	61.83	62.91
TraesCS3A01G133300.1	Wheat	plastid	61.19	62.53
HORVU3Hr1G029020.4	Barley	plastid	61.19	62.39
TraesCS3B01G166200.1	Wheat	plastid	60.98	62.31
TraesCS3D01G149500.1	Wheat	plastid	60.98	62.31
TraesCS5B01G082600.1	Wheat	plastid	59.91	61.09
TraesCS5B01G083500.1	Wheat	plastid	59.7	60.87
TraesCS5A01G076800.1	Wheat	plastid	59.28	60.43
TraesCS5D01G090000.1	Wheat	plastid	59.49	58.0
Zm00001d040583_P001	Maize	cytosol, plastid	41.79	56.0
Zm00001d040582_P002	Maize	plastid	24.52	54.5
Os01t0295900-01	Rice	mitochondrion	20.9	49.75
KRH65783	Soybean	nucleus	13.65	33.68
PGSC0003DMT400027091	Potato	cytosol	18.34	24.86

Protein Annotations

EntrezGene:102589203	MapMan:16.6.2.3	Gene3D:3.30.420.40	GO:GO:0002949	GO:GO:0003674	GO:GO:0003824
GO:GO:0004222	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006508	GO:GO:0008033	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0016787	GO:GO:0019538
GO:GO:0046872	GO:GO:0061711	InterPro:Gcp-like_dom	InterPro:KAE1/TsaD	UniProt:M1A9Z9	HAMAP:MF_01445
PFAM:PF00814	EnsemblPlantsGene:PGSC0003DMG401007021	PGSC:PGSC0003DMG401007021	EnsemblPlants:PGSC0003DMT400018067	PRINTS:PR00789	PANTHER:PTHR11735
PANTHER:PTHR11735:SF6	SUPFAM:SSF53067	TIGRFAMs:TIGR00329	TIGRFAMs:TIGR03723	InterPro:TsaD	UniParc:UPI000296899F
RefSeq:XP_006345517.1	RefSeq:XP_015163387.1	SEG:seg	:	:	:

Description

O-sialoglycoprotein endopeptidase [Source:PGSC_GENE;Acc:PGSC0003DMG401007021]

Coordinates

chr5:+:45523662..45531357

Molecular Weight (calculated)

51101.6 Da

IEP (calculated)

7.615

GRAVY (calculated)

-0.125

Length

469 amino acids

Sequence
(BLAST)

001: MVSLLPNLSS PISRLRLLWR PSIHLTFKAT SKLQLHNKAV KPQLFKSFSA YCSTSASNVQ TQNQILGENE NLVVLGIETS CDDTAAAVVN SNGEILSQVI
101: SSQAELLARY GGVAPKMAEE AHALVIDQVV QEALDKANLT EKDLTAVAVT IGPGLSLCLR IGVRKARSVA GSHNLPLVGV HHMEAHTLVA RLVDRELQFP
201: FMALLVSGGH NLLILARDLG DYIQLGTTID DAIGEAYDKT AKWLGLDLRK SGGPAVEELA QEGDAKSVKF KVPMKQHKDC NFSYAGLKTQ VRLAIEAKRI
301: NAEISLASAS DEERQARADI AASFQRVAVL HLEEKCERAI EWGLNIEPSI NHLVVSGGVA SNKYVRARLD EVVKRKGLKL VCPPPSLCTD NGVMVAWTGL
401: EHFRLGRFDP PPPANEPEDA VLDLRPRWPL GEEYAEGKSE ARSMRTARMH PSLTSLIKAS IKQESQSAI

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.