Factsheet for VIT_15s0048g00390.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH65326	Soybean	plastid	73.72	77.53
Solyc05g050940.2.1	Tomato	mitochondrion, plastid	71.37	73.73
PGSC0003DMT400018067	Potato	mitochondrion, plastid	72.44	72.28
CDY20454	Canola	mitochondrion	45.09	69.41
AT2G45270.1	Thale cress	plastid	70.09	68.33
CDX74720	Canola	mitochondrion, plastid	69.23	67.64
CDY18936	Canola	mitochondrion, plastid	69.02	67.57
Bra004895.1-P	Field mustard	mitochondrion	68.59	67.01
Os12t0485000-02	Rice	plastid	64.53	65.51
OQU86762	Sorghum	plastid	65.17	65.03
TraesCS3D01G149500.1	Wheat	plastid	63.25	64.49
TraesCS3B01G166200.1	Wheat	plastid	63.25	64.49
TraesCS3A01G133300.1	Wheat	plastid	63.03	64.27
TraesCS5B01G083500.1	Wheat	plastid	62.82	63.91
HORVU3Hr1G029020.4	Barley	plastid	62.61	63.7
TraesCS5B01G082600.1	Wheat	plastid	62.39	63.48
TraesCS5A01G076800.1	Wheat	plastid	62.18	63.26
GSMUA_Achr10P...	Banana	plastid	40.38	63.21
TraesCS5D01G090000.1	Wheat	plastid	61.97	60.29
Zm00001d040583_P001	Maize	cytosol, plastid	43.8	58.57
Os01t0295900-01	Rice	mitochondrion	22.01	52.28
Zm00001d040582_P002	Maize	plastid	21.58	47.87
KRH65783	Soybean	nucleus	13.46	33.16
VIT_05s0102g00570.t01	Wine grape	cytosol	11.54	28.72
VIT_00s2082g00010.t01	Wine grape	cytosol	6.62	20.53

Protein Annotations

EntrezGene:100260957	wikigene:100260957	MapMan:16.6.2.3	Gene3D:3.30.420.40	ProteinID:CBI38898	ProteinID:CBI38898.3
UniProt:D7U7W9	EMBL:FN596739	GO:GO:0000003	GO:GO:0000408	GO:GO:0002949	GO:GO:0003674
GO:GO:0003824	GO:GO:0004222	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005743	GO:GO:0006139	GO:GO:0006508	GO:GO:0007275
GO:GO:0008033	GO:GO:0008150	GO:GO:0008152	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009987	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0016787
GO:GO:0019538	GO:GO:0046872	GO:GO:0061711	InterPro:Gcp-like_dom	InterPro:KAE1/TsaD	EntrezGene:LOC100260957
wikigene:LOC100260957	HAMAP:MF_01445	PFAM:PF00814	PRINTS:PR00789	PANTHER:PTHR11735	PANTHER:PTHR11735:SF6
SUPFAM:SSF53067	TIGR:TC64673	TIGR:TC65286	TIGRFAMs:TIGR00329	TIGRFAMs:TIGR03723	InterPro:TsaD
UniParc:UPI00015CA4C1	ArrayExpress:VIT_15s0048g00390	EnsemblPlantsGene:VIT_15s0048g00390	EnsemblPlants:VIT_15s0048g00390.t01	unigene:Vvi.8651	RefSeq:XP_002280713
RefSeq:XP_002280713.1	SEG:seg	:	:	:	:

Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/TrEMBL;Acc:D7U7W9]

Coordinates

chr15:-:14521029..14530827

Molecular Weight (calculated)

51045.1 Da

IEP (calculated)

7.396

GRAVY (calculated)

-0.175

Length

468 amino acids

Sequence
(BLAST)

001: MVSLATSTFS RNLFPRPSLP YVVRALGTTL LQLHPKPTSW GPLSSSWKSC SAHFSASSFN LSKSQNETLG SQDDLVVLGI ETSCDDTAAA IVRSNGDILS
101: QVVSSQADLL ARYGGVAPKM AEGAHMQVID RVVQDALENA NLTERDLSAV AVTIGPGLSL CLRVGVQKAR KIAGSHNLPI VGVHHMEAHA LVARLIEKDL
201: QFPFMALLIS GGHNLLILAR DLGHYIQLGT TIDDAIGEAY DKTAKWLGLD LRRSGGPAIE ELAREGDAKA VKFSTPMKQH KDCNFSYAGL KTQVRLAIES
301: RNINAEIPIS SASSEDRSSR ADIAASFQRV AVLHLEERCE RAIEWALKIE PSIKHLVVSG GVASNQYVRA QLDQVVKKKS LQLVCPPPSL CTDNGVMVAW
401: TGLEHFRMGR YDPPPPANEP EDYVYDLRPR WPLGEEYSEG RSEARSLRTA RIHPSLTSLI QASMQQQS

Best Arabidopsis Sequence Match ( AT2G45270.1 )
(BLAST)

001: MVRLFLTLSP AISRFNLYPG ISILARNNNS LRLQKHHKLK TKTPTFSLIS PSSSPNFQRT RFYSTETRIS SLPYSENPNF DDNLVVLGIE TSCDDTAAAV
101: VRGNGEILSQ VISSQAELLV QYGGVAPKQA EEAHSRVIDK VVQDALDKAN LTEKDLSAVA VTIGPGLSLC LRVGVRKARR VAGNFSLPIV GVHHMEAHAL
201: VARLVEQELS FPFMALLISG GHNLLVLAHK LGQYTQLGTT VDDAIGEAFD KTAKWLGLDM HRSGGPAVEE LALEGDAKSV KFNVPMKYHK DCNFSYAGLK
301: TQVRLAIEAK EIDAKCPVSS ATNEDRRNRA DIAASFQRVA VLHLEEKCER AIDWALELEP SIKHMVISGG VASNKYVRLR LNNIVENKNL KLVCPPPSLC
401: TDNGVMVAWT GLEHFRVGRY DPPPPATEPE DYVYDLRPRW PLGEEYAKGR SEARSMRTAR IHPSLTSIIR ADSLQQQTQT

Arabidopsis Description

GCP1Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O22145]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.