Factsheet for VIT_00s2082g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 2
cytosol 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05760.t01
VIT_05s0020g02800.t01
VIT_16s0013g00240.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	VIT_04s0008g05760.t01	AT2G25000.1	21798944
AT4G22720.1	VIT_05s0020g02800.t01	AT5G19150.1	21798944
AT4G22720.1	VIT_16s0013g00240.t01	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67122	Canola	endoplasmic reticulum, extracellular	59.6	64.75
KRG97103	Soybean	cytosol	83.44	35.8
KRH03601	Soybean	cytosol	82.12	35.23
AT4G22720.1	Thale cress	cytosol	81.46	34.84
CDX82960	Canola	cytosol, mitochondrion	81.46	34.84
PGSC0003DMT400027091	Potato	cytosol	78.81	34.39
Solyc02g068750.1.1	Tomato	cytosol	78.15	34.1
CDX79172	Canola	cytosol	82.12	29.31
Bra013635.1-P	Field mustard	cytosol	80.79	28.77
VIT_15s0048g00390.t01	Wine grape	mitochondrion	20.53	6.62
Bra020834.1-P	Field mustard	nucleus	0.66	1.02
VIT_05s0102g00570.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EntrezGene:100266439	wikigene:100266439	MapMan:16.6.2.2.1	Gene3D:3.30.420.40	ProteinID:CBI35755	ProteinID:CBI35755.3
UniProt:D7TZ32	EMBL:FN596374	GO:GO:0000408	GO:GO:0002949	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	InterPro:Gcp-like_dom	InterPro:Kae1/OSGEP	EntrezGene:LOC100266439	wikigene:LOC100266439	PFAM:PF00814
PANTHER:PTHR11735	PANTHER:PTHR11735:SF14	SUPFAM:SSF53067	UniParc:UPI0001BE491C	ArrayExpress:VIT_00s2082g00010	EnsemblPlantsGene:VIT_00s2082g00010
EnsemblPlants:VIT_00s2082g00010.t01	RefSeq:XP_002267047	RefSeq:XP_002267047.2	:	:	:

Description

No Description!

Coordinates

chrUn:-:41022271..41024251

Molecular Weight (calculated)

16863.0 Da

IEP (calculated)

4.349

GRAVY (calculated)

-0.186

Length

151 amino acids

Sequence
(BLAST)

001: MDVSFSGLLS YIEATAVEKL QNNECTPADL CYSLQETVFA MLVEITERAM AHCDKKDVLI VGGVGCNERL QEMMRVMCSE RSGRLFATDD RYCIDNGAMI
101: AYTGLLAYAH GATTPLEEST FTQRFRTDEV HAIWREKEEL SNTNGLLEGS T

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.