Factsheet for PGSC0003DMT400027091

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013443
PGSC0003DMT400019058
PGSC0003DMT400019061
PGSC0003DMT400023297
PGSC0003DMT400046911

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22720.1	PGSC0003DMT400019058	AT2G25000.1	21798944
AT4G22720.1	PGSC0003DMT400019061	AT2G25000.1	21798944
AT4G22720.1	PGSC0003DMT400046911	AT5G06780.1	21798944
AT4G22720.1	PGSC0003DMT400023297	AT5G19150.1	21798944
AT4G22720.1	PGSC0003DMT400013443	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g068750.1.1	Tomato	cytosol	98.84	98.84
KRG97103	Soybean	cytosol	87.86	86.36
GSMUA_Achr7P10790_001	Banana	cytosol	86.42	86.17
KRH03601	Soybean	cytosol	87.57	86.08
AT4G22720.1	Thale cress	cytosol	85.55	83.85
CDX82960	Canola	cytosol, mitochondrion	85.55	83.85
VIT_00s2082g00010.t01	Wine grape	cytosol	34.39	78.81
OQU77586	Sorghum	plastid	81.21	73.75
Zm00001d037675_P001	Maize	extracellular	80.35	72.97
TraesCS1A01G123600.1	Wheat	plastid	80.35	72.97
TraesCS1D01G130800.1	Wheat	plastid	80.06	72.7
TraesCS1B01G143400.1	Wheat	plastid	79.77	72.44
CDX79172	Canola	cytosol	85.26	69.74
Bra013635.1-P	Field mustard	cytosol	84.97	69.34
HORVU1Hr1G028330.1	Barley	cytosol, extracellular, mitochondrion, plastid	80.06	64.27
CDY67122	Canola	endoplasmic reticulum, extracellular	25.72	64.03
GSMUA_Achr10P...	Banana	cytosol	74.28	57.75
Bra020834.1-P	Field mustard	nucleus	14.16	50.0
PGSC0003DMT400018067	Potato	mitochondrion, plastid	24.86	18.34

Protein Annotations

MapMan:16.6.2.2.1	Gene3D:3.30.420.40	ProteinID:ABC01899	ProteinID:ABC01899.1	EMBL:DQ294267	GO:GO:0000408
GO:GO:0002949	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0008033	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	GO:GO:0046872
GO:GO:0061711	InterPro:Gcp-like_dom	InterPro:KAE1/TsaD	InterPro:Kae1/OSGEP	UniProt:M1AP61	MEROPS:M22.003
HAMAP:MF_01446	PFAM:PF00814	EnsemblPlantsGene:PGSC0003DMG400010450	PGSC:PGSC0003DMG400010450	EnsemblPlants:PGSC0003DMT400027091	PRINTS:PR00789
PANTHER:PTHR11735	PANTHER:PTHR11735:SF14	SUPFAM:SSF53067	TIGRFAMs:TIGR00329	UniParc:UPI00029605FB	:

Description

Glycoprotein endopeptidase [Source:PGSC_GENE;Acc:PGSC0003DMG400010450]

Coordinates

chr2:+:27608039..27609565

Molecular Weight (calculated)

37724.6 Da

IEP (calculated)

5.642

GRAVY (calculated)

-0.003

Length

346 amino acids

Sequence
(BLAST)

001: MKDKKLIALG FEGSANKIGV GVVAIDGTIL SNPRHTYITP PGQGFLPRET AQHHHQHILP LVKSALETAG VTPDEIDCIC YTKGPGMGAP LQVSAVVVRV
101: LSQLWKKPIV GVNHCVAHIE MGRIVTGAVD PVVLYVSGGN SQVIAYSEGR YRIFGETIDI AVGNCLDRFA RVLTLSNDPS PGYNIEQLAK KGEKFIELPY
201: VVKGMDVSFS GILSFIEATA EEKLKNNECS PADLCFSLQE TLFAMLVEIT ERAMAHCDKK DVLIVGGVGC NERLQKMMQI MCSERGGNLF ATDDRYCVDN
301: GAMIAYTGLL EYANGASTPM EESTFTQRFR TDEVLATWRE KESAIA

Best Arabidopsis Sequence Match ( AT4G22720.2 )
(BLAST)

001: MKKKMIAIGF EGSANKIGVG IVTLDGTILA NPRHTYITPP GHGFLPRETA HHHLDHVLPL VKSALETSQV TPEEIDCICY TKGPGMGAPL QVSAIVVRVL
101: SQLWKKPIVA VNHCVAHIEM GRVVTGADDP VVLYVSGGNT QVIAYSEGRY RIFGETIDIA VGNCLDRFAR VLKLSNDPSP GYNIEQLAKK GENFIDLPYA
201: VKGMDVSFSG ILSYIETTAE EKLKNNECTP ADLCYSLQET VFAMLVEITE RAMAHCDKKD VLIVGGVGCN ERLQEMMRTM CSERDGKLFA TDDRYCIDNG
301: AMIAYTGLLA FVNGIETPIE DSTFTQRFRT DEVHAVWREK EAVLLGDKKV AAN

Arabidopsis Description

Probable tRNA N6-adenosine threonylcarbamoyltransferase [Source:UniProtKB/TrEMBL;Acc:O49653]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.